RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 J3KTA2 159 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CDK2AP1O14519 115 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 POLR1CO15160 346 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GREM1O60565 184 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 TPST2O60704 377 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 FHP07954 510 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SPNP16150 400 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 NPPBP16860 134 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CSNK2A2P19784 350 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF10P21506 573 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 HLA-FP30511 346 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ACSL1P33121 698 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 TGFBR1P36897 503 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 MMP12P39900 470 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CTSOP43234 321 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 LIMS1P48059 325 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 NCBP2P52298 156 aaKnown RBP eCLIP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CTSCP53634 463 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PCBP4P57723 403 aaKnown RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PITPNAQ00169 270 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 E2F2Q14209 437 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SLC9A5Q14940 896 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 GPR19Q15760 415 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 COL28A1Q2UY09 1125 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 LRRC73Q5JTD7 316 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ADNP2Q6IQ32 1131 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 RPL13AP3Q6NVV1 102 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 MTFR2Q6P444 385 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF600Q6ZNG1 722 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 TMEM173Q86WV6 379 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 LAX1Q8IWV1 398 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PHC2Q8IXK0 858 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 TCTE3Q8IZS6 198 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 FAM160A2Q8N612 972 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 HORMAD2Q8N7B1 307 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SLC38A5Q8WUX1 472 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 JPH3Q8WXH2 748 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 AKAP1Q92667 903 aaKnown RBP eCLIP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 PHF21AQ96BD5 680 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 KCTD12Q96CX2 325 aaKnown RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 C11orf24Q96F05 449 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-214ENST00000637038 HYLS1Q96M11 299 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 MED28Q9H204 178 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 EVA1AQ9H8M9 152 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 KCNK12Q9HB15 430 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 FZD3Q9NPG1 666 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ASB6Q9NWX5 421 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 NLGN3Q9NZ94 848 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 COMMD3Q9UBI1 195 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 CA14Q9ULX7 337 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF780BQ9Y6R6 833 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 SPACA6W5XKT8 324 aa3.75□□□□□ -1.81
SCN1A-214ENST00000637038 FAM186AA6NE01 2351 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 EDDM13A0A1B0GTR0 161 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 A0A1B0GW55 424 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ANKRD34BA5PLL1 514 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 OR1F1O43749 312 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 NOS1APO75052 506 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SLC43A1O75387 559 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SERPINA3P01011 423 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 DUX4L2P0CJ85 424 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 DUX4L3P0CJ86 424 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 DUX4L4P0CJ87 422 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 DUX4L5P0CJ88 424 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 DUX4L6P0CJ89 424 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 DUX4L7P0CJ90 424 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 GALP22466 123 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 GIPRP48546 466 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RGS8P57771 180 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SIM1P81133 766 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CD83Q01151 205 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 EEF1A2Q05639 463 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CD300CQ08708 224 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TPBGQ13641 420 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 MLC1Q15049 377 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TCTN1Q2MV58 587 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TMEM95Q3KNT9 176 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 HSD17B12Q53GQ0 312 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SLC35F1Q5T1Q4 408 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 METTL11BQ5VVY1 283 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 PLPP4Q5VZY2 271 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 LIPIQ6XZB0 460 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TMEM64Q6YI46 380 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RFLNAQ6ZTI6 216 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 LRRTM4Q86VH4 590 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RANBP3LQ86VV4 465 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 GPALPP1Q8IXQ4 340 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 LRRC56Q8IYG6 542 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RDH10Q8IZV5 341 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 MRPL43Q8N983 215 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 OR52I1Q8NGK6 324 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 OR2L2Q8NH16 312 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 FAM3CQ92520 227 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TFGQ92734 400 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RAB7BQ96AH8 199 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF582Q96NG8 517 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 OR4K3Q96R72 315 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SLC22A12Q96S37 553 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RHBGQ9H310 441 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 OR51I1Q9H343 314 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms