RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 INTS12Q96CB8 462 aaKnown RBP16.7■□□□□ 0.26
CLN3-241ENST00000635861 G6PC3Q9BUM1 346 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 PLEKHF2Q9H8W4 249 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 SDHAF3Q9NRP4 125 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 GALNT8Q9NY28 637 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 DCDC2Q9UHG0 476 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 FBXL2Q9UKC9 423 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 PACSIN3Q9UKS6 424 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 ABCG2Q9UNQ0 655 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 OR10H1Q9Y4A9 318 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 RIPK2O43353 540 aa16.69■□□□□ 0.26
CLN3-241ENST00000635861 ANXA4P09525 319 aaPredicted RBP16.69■□□□□ 0.26
CLN3-241ENST00000635861 PEPDP12955 493 aa16.69■□□□□ 0.26
CLN3-241ENST00000635861 HTR6P50406 440 aa16.69■□□□□ 0.26
CLN3-241ENST00000635861 DEFB113Q30KQ7 82 aa16.69■□□□□ 0.26
CLN3-241ENST00000635861 SLC44A2Q8IWA5 706 aaPredicted RBP16.69■□□□□ 0.26
CLN3-241ENST00000635861 OR7G2Q8NG99 324 aa16.69■□□□□ 0.26
CLN3-241ENST00000635861 OR4K17Q8NGC6 315 aa16.69■□□□□ 0.26
CLN3-241ENST00000635861 METTL2AQ96IZ6 378 aaKnown RBP16.69■□□□□ 0.26
CLN3-241ENST00000635861 PPP4R1LQ9P1A2 415 aa16.69■□□□□ 0.26
CLN3-241ENST00000635861 PSMC3IPQ9P2W1 217 aaPredicted RBP16.69■□□□□ 0.26
CLN3-241ENST00000635861 NDRG3Q9UGV2 375 aa16.69■□□□□ 0.26
CLN3-241ENST00000635861 MRTO4Q9UKD2 239 aaKnown RBP16.69■□□□□ 0.26
CLN3-241ENST00000635861 SH3D21A4FU49 640 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 TTC36A6NLP5 189 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 A8MXE2 369 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 MSTNO14793 375 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 ZIC3O60481 467 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 EVI2BP34910 448 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 PSMD4P55036 377 aaKnown RBP16.68■□□□□ 0.26
CLN3-241ENST00000635861 PSG6Q00889 435 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 OCRLQ01968 901 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 FOXD4Q12950 439 aaPredicted RBP16.68■□□□□ 0.26
CLN3-241ENST00000635861 HSP90B2PQ58FF3 399 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 IKBIPQ70UQ0 350 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 CHMP1BQ7LBR1 199 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 LUZP2Q86TE4 346 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 GOLGA6L1Q8N7Z2 621 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 FADS6Q8N9I5 356 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 POM121Q96HA1 1249 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 GSTO2Q9H4Y5 243 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 ANKRA2Q9H9E1 313 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 HHATLQ9HCP6 504 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 MYNNQ9NPC7 610 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 MIEF1Q9NQG6 463 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 DLL4Q9NR61 685 aa16.68■□□□□ 0.26
CLN3-241ENST00000635861 C19orf53Q9UNZ5 99 aaPredicted RBP16.68■□□□□ 0.26
CLN3-241ENST00000635861 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 CASKO14936 926 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 TNFSF13O75888 250 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 HRGP04196 525 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 STARP49675 285 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 CLK3P49761 638 aaKnown RBP16.67■□□□□ 0.26
CLN3-241ENST00000635861 ADAM8P78325 824 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 C2orf80Q0P641 193 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 ZNF155Q12901 538 aaPredicted RBP16.67■□□□□ 0.26
CLN3-241ENST00000635861 FGFBP1Q14512 234 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 DECR1Q16698 335 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 P4HA3Q7Z4N8 544 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 HOMEZQ8IX15 550 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 MEIOBQ8N635 442 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.67■□□□□ 0.26
CLN3-241ENST00000635861 EFHD2Q96C19 240 aaPredicted RBP16.67■□□□□ 0.26
CLN3-241ENST00000635861 EBPLQ9BY08 206 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 PTGES2Q9H7Z7 377 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 MID1IP1Q9NPA3 183 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 ZNF446Q9NWS9 450 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 TIMM22Q9Y584 194 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 ARID1AO14497 2285 aa16.67■□□□□ 0.26
CLN3-241ENST00000635861 NSD1Q96L73 2696 aaPredicted RBP16.67■□□□□ 0.26
CLN3-241ENST00000635861 A0A1W2PNV4 684 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 FADS1O60427 444 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 GLRA3O75311 464 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 RSL1D1O76021 490 aaKnown RBP16.66■□□□□ 0.26
CLN3-241ENST00000635861 PSMG1O95456 288 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 NTSP30990 170 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 NCBP2P52298 156 aaKnown RBP eCLIP16.66■□□□□ 0.26
CLN3-241ENST00000635861 B3GALT5-AS1P59052 145 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 ZNHIT3Q15649 155 aaPredicted RBP16.66■□□□□ 0.26
CLN3-241ENST00000635861 IMPG1Q17R60 797 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 GLYR1Q49A26 553 aaPredicted RBP16.66■□□□□ 0.26
CLN3-241ENST00000635861 SPDYAQ5MJ70 313 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 OR5M10Q6IEU7 315 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 FAM71E1Q6IPT2 247 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 TRIM46Q7Z4K8 759 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 GSPT2Q8IYD1 628 aaKnown RBP16.66■□□□□ 0.26
CLN3-241ENST00000635861 GCNT2Q8N0V5 402 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 OR2L13Q8N349 312 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 KCNA7Q96RP8 456 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 VIPAS39Q9H9C1 493 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 C3orf14Q9HBI5 128 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 Q9N2J8 555 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 MED4Q9NPJ6 270 aa16.66■□□□□ 0.26
CLN3-241ENST00000635861 BEX4Q9NWD9 120 aaPredicted RBP16.66■□□□□ 0.26
CLN3-241ENST00000635861 FAM120CQ9NX05 1096 aaKnown RBP16.66■□□□□ 0.26
CLN3-241ENST00000635861 EIF3LQ9Y262 564 aaKnown RBP16.66■□□□□ 0.26
CLN3-241ENST00000635861 HEATR5AQ86XA9 2040 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 SLC22A20A6NK97 555 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 FAM153BP0C7A2 387 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 PYGBP11216 843 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms