RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PIK3R3Q92569 461 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 CHMP6Q96FZ7 201 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 RMND5BQ96G75 393 aaPredicted RBP18.95■□□□□ 0.62
CLN3-240ENST00000631023 C16orf58Q96GQ5 468 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 TEX37Q96LM6 180 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 STACQ99469 402 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 ZNF703Q9H7S9 590 aaPredicted RBP18.95■□□□□ 0.62
CLN3-240ENST00000631023 GIN1Q9NXP7 522 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 ZIM2Q9NZV7 527 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 SCN2BO60939 215 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 CPSF4O95639 269 aaKnown RBP18.94■□□□□ 0.62
CLN3-240ENST00000631023 RFPL3SP0C7P2 107 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 ACP2P11117 423 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 CYP4B1P13584 511 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 GDF1P27539 372 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 PTGS2P35354 604 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 RFX3P48380 749 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 CLK3P49761 638 aaKnown RBP18.94■□□□□ 0.62
CLN3-240ENST00000631023 PER3P56645 1201 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 PHC1P78364 1004 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 ANGPTL8Q6UXH0 198 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 ANKRD46Q86W74 232 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 COX18Q8N8Q8 333 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 NTNG2Q96CW9 530 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 MARK4Q96L34 752 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 OR52E6Q96RD3 313 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 YIPF4Q9BSR8 244 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 CCDC28BQ9BUN5 200 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 SDR39U1Q9NRG7 319 aaPredicted RBP18.94■□□□□ 0.62
CLN3-240ENST00000631023 DUSP22Q9NRW4 184 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 ERRFI1Q9UJM3 462 aaPredicted RBP18.94■□□□□ 0.62
CLN3-240ENST00000631023 PCDHGB3Q9Y5G1 929 aa18.94■□□□□ 0.62
CLN3-240ENST00000631023 GXYLT2A0PJZ3 443 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 PRRG2O14669 202 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 GNB5O14775 395 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 SUSD5O60279 629 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 HCN1O60741 890 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 IGHG3P01860 377 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 IL6P05231 212 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 PGRP06401 933 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 CA7P43166 264 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 DUSP5Q16690 384 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 C1QL3Q5VWW1 255 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 CDC73Q6P1J9 531 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 MIER2Q8N344 545 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 FBXO30Q8TB52 745 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 ADAMTS15Q8TE58 950 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 RELTQ969Z4 430 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 DTNBP1Q96EV8 351 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 GNRHR2Q96P88 292 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 PIGUQ9H490 435 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 EXO5Q9H790 373 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 GALNT9Q9HCQ5 603 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 ACKR4Q9NPB9 350 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 BTNL2Q9UIR0 455 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 ABCG2Q9UNQ0 655 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 COL12A1Q99715 3063 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 ICE1Q9Y2F5 2266 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 EDF1O60869 148 aaKnown RBP18.93■□□□□ 0.62
CLN3-240ENST00000631023 TRAPPC6AO75865 159 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 IL12AP29459 219 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 EVI2BP34910 448 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 PTGDSP41222 190 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 DGKQP52824 942 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 STX1BP61266 288 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 EXOSC6Q5RKV6 272 aaKnown RBP18.93■□□□□ 0.62
CLN3-240ENST00000631023 FNDC7Q5VTL7 733 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 TRILQ7L0X0 811 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 FJX1Q86VR8 437 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 OR5AK3PQ8NH89 298 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 SSC4DQ8WTU2 575 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 BTBD2Q9BX70 525 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 SDHAF3Q9NRP4 125 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 GPATCH2Q9NW75 528 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 C15orf41Q9Y2V0 281 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 WIF1Q9Y5W5 379 aa18.93■□□□□ 0.62
CLN3-240ENST00000631023 SPTAN1Q13813 2472 aaKnown RBP18.92■□□□□ 0.62
CLN3-240ENST00000631023 PHF3Q92576 2039 aaKnown RBP18.92■□□□□ 0.62
CLN3-240ENST00000631023 TRGV5A0A0B4J1U4 118 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 RNF103-CHMP3A0A140T963 221 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 A0A1B0GVC2 190 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 C2orf72A6NCS6 295 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 OR14I1A6ND48 311 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 SNPHO15079 494 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 CELA3AP09093 270 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 UQCRC2P22695 453 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 LCN1P31025 176 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 MAN2A2P49641 1150 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 POU6F2P78424 691 aaPredicted RBP18.92■□□□□ 0.62
CLN3-240ENST00000631023 TOMM20Q15388 145 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 C6orf120Q7Z4R8 191 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 CHERPQ8IWX8 916 aaKnown RBP18.92■□□□□ 0.62
CLN3-240ENST00000631023 EID3Q8N140 333 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 FAM110BQ8TC76 370 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 CCDC115Q96NT0 180 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 EBF4Q9BQW3 602 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 SIKE1Q9BRV8 207 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 G6PC3Q9BUM1 346 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 SH3BGRL2Q9UJC5 107 aa18.92■□□□□ 0.62
CLN3-240ENST00000631023 DUXAA6NLW8 204 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms