RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PIGAP37287 484 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 RFC3P40938 356 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 ZFP36L2P47974 494 aaKnown RBP16.6■□□□□ 0.25
CLN3-239ENST00000628023 SEC24CP53992 1094 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 RPS26P62854 115 aaKnown RBP16.6■□□□□ 0.25
CLN3-239ENST00000628023 ALDH6A1Q02252 535 aaKnown RBP16.6■□□□□ 0.25
CLN3-239ENST00000628023 DUSP5Q16690 384 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 TBCELQ5QJ74 424 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 CDC73Q6P1J9 531 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 C6orf120Q7Z4R8 191 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 LURAP1LQ8IV03 231 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 OR2M7Q8NG81 312 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 DNAJB8Q8NHS0 232 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 FAR1Q8WVX9 515 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 SPDL1Q96EA4 605 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 JSRP1Q96MG2 331 aaPredicted RBP16.6■□□□□ 0.25
CLN3-239ENST00000628023 SECISBP2Q96T21 854 aaKnown RBP16.6■□□□□ 0.25
CLN3-239ENST00000628023 STACQ99469 402 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 DOHHQ9BU89 302 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 SH2D2AQ9NP31 389 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 GPATCH2Q9NW75 528 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 TMEM45AQ9NWC5 275 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 KLRF1Q9NZS2 232 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 POLEQ07864 2286 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 ASPDHA6ND91 283 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 ACOT7O00154 380 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 TFECO14948 347 aaPredicted RBP16.59■□□□□ 0.25
CLN3-239ENST00000628023 TSPAN2O60636 221 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 GSNP06396 782 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 CDKN2CP42773 168 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 MASP1P48740 699 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 PNLIPRP2P54317 469 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 POU6F2P78424 691 aaPredicted RBP16.59■□□□□ 0.25
CLN3-239ENST00000628023 DESI1Q6ICB0 168 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 BLOC1S3Q6QNY0 202 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 CPLX4Q7Z7G2 160 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 GOT1L1Q8NHS2 421 aaPredicted RBP16.59■□□□□ 0.25
CLN3-239ENST00000628023 C10orf82Q8WW14 230 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 HOXB13Q92826 284 aaPredicted RBP16.59■□□□□ 0.25
CLN3-239ENST00000628023 CDS1Q92903 461 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 HGDQ93099 445 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 SLC35A4Q96G79 324 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 DUSP22Q9NRW4 184 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 MRGBPQ9NV56 204 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 CNOT11Q9UKZ1 510 aaKnown RBP16.59■□□□□ 0.25
CLN3-239ENST00000628023 BOKQ9UMX3 212 aaPredicted RBP16.59■□□□□ 0.25
CLN3-239ENST00000628023 PCDHGB3Q9Y5G1 929 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.59■□□□□ 0.25
CLN3-239ENST00000628023 CENPEQ02224 2701 aa16.59■□□□□ 0.25
CLN3-239ENST00000628023 GMNCA6NCL1 334 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 PRAMEF25A6NGN4 478 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 IL33O95760 270 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 CYP4B1P13584 511 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 EDN3P14138 238 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 MATN1P21941 496 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 KHKP50053 298 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 CASP9P55211 416 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 BICRALQ6AI39 1079 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 FIGNL1Q6PIW4 674 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 SLC2A7Q6PXP3 512 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 SPATA21Q7Z572 469 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 GALNT10Q86SR1 603 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 FUNDC1Q8IVP5 155 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 OR5D16Q8NGK9 328 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 NR4A3Q92570 626 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 NEURL3Q96EH8 262 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 ZNF597Q96LX8 424 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 OR7D2Q96RA2 312 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 NODALQ96S42 347 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 ELAC2Q9BQ52 826 aaKnown RBP16.58■□□□□ 0.24
CLN3-239ENST00000628023 BTBD2Q9BX70 525 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 OSBPL11Q9BXB4 747 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 PIGUQ9H490 435 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 ZNF385DQ9H6B1 395 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 SERHLQ9NQF3 203 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 EXPH5Q8NEV8 1989 aa16.58■□□□□ 0.24
CLN3-239ENST00000628023 PINLYPA6NC86 204 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 FAM166BA8MTA8 275 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 ICOSLGO75144 302 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 SOX30O94993 753 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 SNX4O95219 450 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 CLDN1O95832 211 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 CAPN3P20807 821 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 MAP3K8P41279 467 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 CASP3P42574 277 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 ANXA11P50995 505 aaKnown RBP16.57■□□□□ 0.24
CLN3-239ENST00000628023 SAXO2Q658L1 398 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 TNFAIP8L2Q6P589 184 aaPredicted RBP16.57■□□□□ 0.24
CLN3-239ENST00000628023 PACS2Q86VP3 889 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 SLC22A16Q86VW1 577 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 ZFP62Q8NB50 900 aaPredicted RBP16.57■□□□□ 0.24
CLN3-239ENST00000628023 G6PC3Q9BUM1 346 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 TTTY12Q9BZ98 90 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 TSPAN10Q9H1Z9 355 aaPredicted RBP16.57■□□□□ 0.24
CLN3-239ENST00000628023 OR51I1Q9H343 314 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 GIN1Q9NXP7 522 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 TUBA8Q9NY65 449 aaPredicted RBP16.57■□□□□ 0.24
CLN3-239ENST00000628023 OSGIN2Q9Y236 505 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 SVILO95425 2214 aa16.57■□□□□ 0.24
CLN3-239ENST00000628023 CACNA1DQ01668 2161 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms