RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CTNNB1P35222 781 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 NUDT1P36639 197 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 SMSP52788 366 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 STX1BP61266 288 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 HAND2P61296 217 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 RPL32P62910 135 aaKnown RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF85Q03923 595 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 CSTF1Q05048 431 aaKnown RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 PUDPQ08623 228 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 NPRL3Q12980 569 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 GK2Q14410 553 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 SMC1AQ14683 1233 aaKnown RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 TYSND1Q2T9J0 566 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 FUT11Q495W5 492 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 GPAT3Q53EU6 434 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 LGSNQ5TDP6 509 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 TSPO2Q5TGU0 170 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 PRAMEF8Q5VWM4 474 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 MEDAGQ5VYS4 303 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 PRR5LQ6MZQ0 368 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 CWC27Q6UX04 472 aaKnown RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 KCTD9Q7L273 389 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 HIST2H2ABQ8IUE6 130 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 Q8N9W7 124 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 ZBTB44Q8NCP5 570 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 MDS2Q8NDY4 140 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 OR4A16Q8NH70 328 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 GOT1L1Q8NHS2 421 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 HIST1H2ACQ93077 130 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 LHX4Q969G2 390 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 RAB39BQ96DA2 213 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 ING2Q9H160 280 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 APMAPQ9HDC9 416 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 EXOSC3Q9NQT5 275 aaKnown RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 CNIH4Q9P003 139 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 TRMT6Q9UJA5 497 aaKnown RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 NAP1L2Q9ULW6 460 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 FOXA2Q9Y261 457 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 MRPS2Q9Y399 296 aaKnown RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 PLEKHG1Q9ULL1 1385 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 ATP6V1G1O75348 118 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 IGKV4-1P06312 121 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 IGHV4-34P06331 123 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 HOXB7P09629 217 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 FCARP24071 287 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 NF2P35240 595 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 TCF7P36402 384 aaPredicted RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 RAG2P55895 527 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 NOP14P78316 857 aaKnown RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 IL18R1Q13478 541 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 SCARB2Q14108 478 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 DPYSL3Q14195 570 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 EIF2B1Q14232 305 aaKnown RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 CLPPQ16740 277 aaPredicted RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 FAM133BQ5BKY9 247 aaKnown RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 HIST2H2AA3Q6FI13 130 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 ZSCAN25Q6NSZ9 544 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 UFSP1Q6NVU6 142 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 C11orf88Q6PI97 169 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 TMED8Q6PL24 325 aaPredicted RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 ATRAIDQ6UW56 229 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 NAT8LQ8N9F0 302 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 DNAJA3Q96EY1 480 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 MBOAT4Q96T53 435 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 ADPGKQ9BRR6 497 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 APOOQ9BUR5 198 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 TM2D1Q9BX74 207 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 OSBPL8Q9BZF1 889 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 PLA2G2FQ9BZM2 168 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 TSPYL1Q9H0U9 437 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 ZDHHC4Q9NPG8 344 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 ZCCHC3Q9NUD5 404 aaKnown RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 TRPC4Q9UBN4 977 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 NARFQ9UHQ1 456 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 MAD2L2Q9UI95 211 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 LCMT1Q9UIC8 334 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 BARX2Q9UMQ3 279 aaPredicted RBP1.37□□□□□ -2.19
SCN1A-208ENST00000625916 STX8Q9UNK0 236 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 SMC3Q9UQE7 1217 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 LIPT1Q9Y234 373 aa1.37□□□□□ -2.19
SCN1A-208ENST00000625916 TRBV7-9A0A0J9YWB2 115 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 MACROD2A1Z1Q3 448 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF320A2RRD8 509 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 H0Y626 953 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 PDLIM1O00151 329 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 SLC28A1O00337 649 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 IMPA2O14732 288 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF263O14978 683 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 TRAF3IP2O43734 574 aaPredicted RBP1.36□□□□□ -2.19
SCN1A-208ENST00000625916 MMP1P03956 469 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 APRTP07741 180 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 UROSP10746 265 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 SDC1P18827 310 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 HTR1EP28566 365 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 MAT2AP31153 395 aaKnown RBP1.36□□□□□ -2.19
SCN1A-208ENST00000625916 LONP1P36776 959 aaKnown RBP1.36□□□□□ -2.19
SCN1A-208ENST00000625916 CTRLP40313 264 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 NSFP46459 744 aaKnown RBP1.36□□□□□ -2.19
SCN1A-208ENST00000625916 RCN2Q14257 317 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms