RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 PINK1Q9BXM7 581 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 REG4Q9BYZ8 158 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 DPH5Q9H2P9 285 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 AHSPQ9NZD4 102 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 FLRT3Q9NZU0 649 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 MED11Q9P086 117 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 WHRNQ9P202 907 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 TXNDC16Q9P2K2 825 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 PCTPQ9UKL6 214 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 PSME2Q9UL46 239 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 TNPO3Q9Y5L0 923 aaKnown RBP5.48□□□□□ -1.53
VRK3-220ENST00000600259 PCNX3Q9H6A9 2034 aa5.48□□□□□ -1.53
VRK3-220ENST00000600259 CADP27708 2225 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 ANK2Q01484 3957 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 A0A096LNT2 108 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 A0A096LPK6 155 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 FAM187AA6NFU0 413 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 RNF212BA8MTL3 300 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 STX16-NPEPL1H3BU86 382 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 LINC01387J3KSC0 135 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 STX16O14662 325 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 RAD51CO43502 376 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 SS18L1O75177 396 aaPredicted RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 GUCY1B2O75343 617 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 BCAS2O75934 225 aaPredicted RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 PDYNP01213 254 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 CD8AP01732 235 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 SOD3P08294 240 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 RPS17P08708 135 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 CHN1P15882 459 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 PPP3CBP16298 524 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 HK1P19367 917 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 PSMA4P25789 261 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 EVI2BP34910 448 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 DEKP35659 375 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 MAGEA12P43365 314 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 CCNG1P51959 295 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 EEFSECP57772 596 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 TRA2BP62995 288 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 ZNF844Q08AG5 666 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 NAB1Q13506 487 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 SLMAPQ14BN4 828 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 PON3Q15166 354 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 CLEC12BQ2HXU8 276 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 CTU2Q2VPK5 515 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 SGO1Q5FBB7 561 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 UBAP2Q5T6F2 1119 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 C6orf163Q5TEZ5 329 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 MFSD12Q6NUT3 480 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 LETMD1Q6P1Q0 360 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 SEZ6L2Q6UXD5 910 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 DNAJC14Q6Y2X3 702 aaPredicted RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 CHMP1BQ7LBR1 199 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 SLC44A2Q8IWA5 706 aaPredicted RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 C1orf52Q8N6N3 182 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 OR7G2Q8NG99 324 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 OR4K17Q8NGC6 315 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 OR9A2Q8NGT5 310 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.47□□□□□ -1.53
VRK3-220ENST00000600259 RAB3IL1Q8TBN0 382 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 FBXO25Q8TCJ0 367 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 ZNF483Q8TF39 744 aaPredicted RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 EFHD2Q96C19 240 aaPredicted RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 KLHL29Q96CT2 875 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 PHF21BQ96EK2 531 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 C1GALT1C1Q96EU7 318 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 PLPPR2Q96GM1 343 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 HBEGFQ99075 208 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 KLHDC3Q9BQ90 382 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 C1QTNF3Q9BXJ4 246 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 KLHL4Q9C0H6 718 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 OR10A4Q9H209 315 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 KCNF1Q9H3M0 494 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 BRF2Q9HAW0 419 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 FOLH1BQ9HBA9 442 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 PRM3Q9NNZ6 103 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 CPSF2Q9P2I0 782 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 DKKL1Q9UK85 242 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 UTS2RQ9UKP6 389 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 PROCRQ9UNN8 238 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 SLC12A4Q9UP95 1085 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 SAR1BQ9Y6B6 198 aa5.47□□□□□ -1.53
VRK3-220ENST00000600259 CHD3Q12873 2000 aaKnown RBP5.47□□□□□ -1.53
VRK3-220ENST00000600259 MYO1GB0I1T2 1018 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 SHISA8B8ZZ34 492 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 ADAMDEC1O15204 470 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 SEC14L5O43304 696 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 ZSCAN12O43309 604 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 TLX2O43763 284 aaPredicted RBP5.46□□□□□ -1.54
VRK3-220ENST00000600259 SCO2O43819 266 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 CD5LO43866 347 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 NDUFS7O75251 213 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 GCM2O75603 506 aaPredicted RBP5.46□□□□□ -1.54
VRK3-220ENST00000600259 PSMG1O95456 288 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 IL33O95760 270 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 IL3P08700 152 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 TSPAN8P19075 237 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 PSMB1P20618 241 aaKnown RBP5.46□□□□□ -1.54
VRK3-220ENST00000600259 HSD17B3P37058 310 aa5.46□□□□□ -1.54
VRK3-220ENST00000600259 MAP3K8P41279 467 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms