RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 FLRT3Q9NZU0 649 aa13.69□□□□□ -0.22
LIG1-215ENST00000597901 KCNN3Q9UGI6 736 aa13.69□□□□□ -0.22
LIG1-215ENST00000597901 ZDHHC2Q9UIJ5 367 aa13.69□□□□□ -0.22
LIG1-215ENST00000597901 MRTO4Q9UKD2 239 aaKnown RBP13.69□□□□□ -0.22
LIG1-215ENST00000597901 ITGB1BP2Q9UKP3 347 aa13.69□□□□□ -0.22
LIG1-215ENST00000597901 GXYLT2A0PJZ3 443 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 MBD3L4A6NDZ8 208 aaPredicted RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 MBD3L3A6NE82 208 aaPredicted RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 MBD3L5A6NJ08 208 aaPredicted RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 TTC36A6NLP5 189 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 C17orf51A8MQB3 221 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 DVL2O14641 736 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 CTIFO43310 598 aaKnown RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 PEX11AO75192 247 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 BMP5P22003 454 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 DPP4P27487 766 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 EVI2BP34910 448 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 SERPINB5P36952 375 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 MAP3K8P41279 467 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 FRKP42685 505 aaPredicted RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 ETV4P43268 484 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 ASMTP46597 345 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 ZNF136P52737 540 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 PRKAG1P54619 331 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 PDE7AQ13946 482 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 RCAN2Q14206 197 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 AAGABQ6PD74 315 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 IFNEQ86WN2 208 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 MREGQ8N565 214 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 RELL2Q8NC24 303 aaPredicted RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 MBD3L2Q8NHZ7 208 aaPredicted RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 AGR3Q8TD06 166 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 DUSP19Q8WTR2 217 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 MTERF3Q96E29 417 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 DTNBP1Q96EV8 351 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 ZBED6CLQ96FA7 236 aaPredicted RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 PPP3R2Q96LZ3 170 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 C3orf30Q96M34 536 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 TUBA1CQ9BQE3 449 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 RTN4RQ9BZR6 473 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 C3orf14Q9HBI5 128 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 ACSS1Q9NUB1 689 aaPredicted RBP13.68□□□□□ -0.22
LIG1-215ENST00000597901 MED11Q9P086 117 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 NTMQ9P121 344 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 GIMAP2Q9UG22 337 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 APCP25054 2843 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 FBN2P35556 2912 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 NCKAP5O14513 1909 aa13.68□□□□□ -0.22
LIG1-215ENST00000597901 TMEM114B3SHH9 223 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 SCO2O43819 266 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 CHMP24386 653 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 CTSSP25774 331 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 UQCRC1P31930 480 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 CLK3P49761 638 aaKnown RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 LHX2P50458 406 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 AGFG1P52594 562 aaKnown RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 PSMD4P55036 377 aaKnown RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 DSCR4P56555 118 aaPredicted RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 MYBPHQ13203 477 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 SNTB1Q13884 538 aaKnown RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 C6orf136Q5SQH8 315 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 LRIG3Q6UXM1 1119 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 R3HCC1LQ7Z5L2 792 aaKnown RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 MARCH3Q86UD3 253 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 EXOC3L1Q86VI1 746 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 NUDCD3Q8IVD9 361 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 FADS6Q8N9I5 356 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 C9orf106Q8NAJ2 232 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 NUP43Q8NFH3 380 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 OR2M3Q8NG83 312 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 OR4K17Q8NGC6 315 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 ZFP28Q8NHY6 868 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 GPR151Q8TDV0 419 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 PIK3R3Q92569 461 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 HOXB13Q92826 284 aaPredicted RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 SFXN2Q96NB2 322 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 UCN2Q96RP3 112 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 EQTNQ9NQ60 294 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 FAM120CQ9NX05 1096 aaKnown RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 PPP4R1LQ9P1A2 415 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 ATP6V1HQ9UI12 483 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 DKKL1Q9UK85 242 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 ABCG2Q9UNQ0 655 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 RPH3AQ9Y2J0 694 aaPredicted RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 L3MBTL1Q9Y468 752 aa13.67□□□□□ -0.22
LIG1-215ENST00000597901 PHF3Q92576 2039 aaKnown RBP13.67□□□□□ -0.22
LIG1-215ENST00000597901 LRBAP50851 2863 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 ABCA12Q86UK0 2595 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 H0Y3Z8 333 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 EMC8O43402 210 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 NKX2-2O95096 273 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 KCNH1O95259 989 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 IGKV1D-16P01601 117 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 EFNA1P20827 205 aaPredicted RBP13.66□□□□□ -0.22
LIG1-215ENST00000597901 TCEA1P23193 301 aaKnown RBP13.66□□□□□ -0.22
LIG1-215ENST00000597901 MAPK1P28482 360 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 KIR2DL3P43628 341 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 RFX3P48380 749 aa13.66□□□□□ -0.22
LIG1-215ENST00000597901 B3GALT5-AS1P59052 145 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms