RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 FADS6Q8N9I5 356 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 C9orf106Q8NAJ2 232 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 OR14L1PQ8NHC6 308 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 HOXB13Q92826 284 aaPredicted RBP11.85□□□□□ -0.51
LIG1-212ENST00000596549 GIMAP5Q96F15 307 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 TUBA1CQ9BQE3 449 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 ROPN1BQ9BZX4 212 aaPredicted RBP11.85□□□□□ -0.51
LIG1-212ENST00000596549 REEP4Q9H6H4 257 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 ROPN1Q9HAT0 212 aaPredicted RBP11.85□□□□□ -0.51
LIG1-212ENST00000596549 EQTNQ9NQ60 294 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 BAIAP2L1Q9UHR4 511 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 CBLCQ9ULV8 474 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 HRNRQ86YZ3 2850 aaPredicted RBP11.85□□□□□ -0.51
LIG1-212ENST00000596549 ANKRD17O75179 2603 aaKnown RBP11.84□□□□□ -0.51
LIG1-212ENST00000596549 GXYLT2A0PJZ3 443 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 ZNF500O60304 480 aaPredicted RBP11.84□□□□□ -0.51
LIG1-212ENST00000596549 FADS1O60427 444 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 SKAP2O75563 359 aaPredicted RBP11.84□□□□□ -0.51
LIG1-212ENST00000596549 CHEK2O96017 543 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 BCKDHAP12694 445 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 CPN1P15169 458 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 TCEA1P23193 301 aaKnown RBP11.84□□□□□ -0.51
LIG1-212ENST00000596549 LHX2P50458 406 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 ASCL1P50553 236 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 CLDN18P56856 261 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 B3GALT5-AS1P59052 145 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 ZNF844Q08AG5 666 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 CYP27C1Q4G0S4 372 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 TRIM42Q8IWZ5 723 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 CLYBLQ8N0X4 340 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 OR2M3Q8NG83 312 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 FBXO30Q8TB52 745 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 PIK3R3Q92569 461 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 PPCDCQ96CD2 204 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 C3orf30Q96M34 536 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 TMEM109Q9BVC6 243 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 Q9N2J8 555 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 SIRT3Q9NTG7 399 aaPredicted RBP11.84□□□□□ -0.51
LIG1-212ENST00000596549 TAS2R10Q9NYW0 307 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 CLCF1Q9UBD9 225 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 KCNN3Q9UGI6 736 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 ABCG2Q9UNQ0 655 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 TMED5Q9Y3A6 229 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 TRAF6Q9Y4K3 522 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 TACC2O95359 2948 aa11.84□□□□□ -0.51
LIG1-212ENST00000596549 NKX2-2O95096 273 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 IL33O95760 270 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 BPGMP07738 259 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 ACP2P11117 423 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 ZNF708P17019 499 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 EFNA1P20827 205 aaPredicted RBP11.83□□□□□ -0.52
LIG1-212ENST00000596549 STARP49675 285 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 STX5Q13190 355 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 PTGR1Q14914 329 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 FBXL19-AS1Q494R0 122 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 EXOSC6Q5RKV6 272 aaKnown RBP11.83□□□□□ -0.52
LIG1-212ENST00000596549 CDH24Q86UP0 819 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 ZPLD1Q8TCW7 415 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 NUDT8Q8WV74 236 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 RMND5BQ96G75 393 aaPredicted RBP11.83□□□□□ -0.52
LIG1-212ENST00000596549 PKNOX2Q96KN3 472 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 SFXN2Q96NB2 322 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 MS4A4EQ96PG1 132 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 ZNF559Q9BR84 538 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 C1orf50Q9BV19 199 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 NTMQ9P121 344 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 PPP4R1LQ9P1A2 415 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 ZNF629Q9UEG4 869 aaPredicted RBP11.83□□□□□ -0.52
LIG1-212ENST00000596549 ZDHHC2Q9UIJ5 367 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 DKKL1Q9UK85 242 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 RPH3AQ9Y2J0 694 aaPredicted RBP11.83□□□□□ -0.52
LIG1-212ENST00000596549 CREBBPQ92793 2442 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 POLQO75417 2590 aa11.83□□□□□ -0.52
LIG1-212ENST00000596549 CLCA1A8K7I4 914 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 H0Y3Z8 333 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 DVL2O14641 736 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 SCAMP2O15127 329 aaKnown RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 HCRTR2O43614 444 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 ZIC3O60481 467 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 LYPLA1O75608 230 aaPredicted RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 IL2RAP01589 272 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 PRPS2P11908 318 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 POU3F2P20265 443 aaPredicted RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 DPP4P27487 766 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 GPC1P35052 558 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 SERPINB5P36952 375 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 RFX3P48380 749 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 AGFG1P52594 562 aaKnown RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 MRPS22P82650 360 aaKnown RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 SRYQ05066 204 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 FOXF2Q12947 444 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 MYBPHQ13203 477 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 RCAN2Q14206 197 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 ZNHIT3Q15649 155 aaPredicted RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 DECR1Q16698 335 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 GRAMD1BQ3KR37 738 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 ENPP6Q6UWR7 440 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 ARSKQ6UWY0 536 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 APOOLQ6UXV4 268 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 ZAR1Q86SH2 424 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms