RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 CUL3Q13618 768 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PHKG1Q16816 387 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 SGSM1Q2NKQ1 1148 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 UGT3A2Q3SY77 523 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 SPANXN2Q5MJ10 180 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 ADAMTSL4-AS1Q5T5F5 129 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PIP5KL1Q5T9C9 394 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 CLEC6AQ6EIG7 209 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 KDM7AQ6ZMT4 941 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 Q6ZSR9 355 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 BZW1Q7L1Q6 419 aaKnown RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 VPS36Q86VN1 386 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 KIRREL3Q8IZU9 778 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 LSMEM2Q8N112 164 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 GPR137CQ8N3F9 429 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 MARVELD2Q8N4S9 558 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 RNF148Q8N7C7 305 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 CCDC63Q8NA47 563 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 ZNF397Q8NF99 534 aaPredicted RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 TMEM185AQ8NFB2 350 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 BPIFCQ8NFQ6 507 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 OR2T6Q8NHC8 308 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 RAET1EQ8TD07 263 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 SLC2A14Q8TDB8 520 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 MAIP1Q8WWC4 291 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 DYRK2Q92630 601 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 C12orf66Q96MD2 445 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 FAM20AQ96MK3 541 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 RPRD1AQ96P16 312 aaPredicted RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PANX2Q96RD6 677 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 CYTH2Q99418 400 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 KCNS3Q9BQ31 491 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 FAM213AQ9BRX8 229 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 NUSAP1Q9BXS6 441 aaKnown RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 OR2B2Q9GZK3 357 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 FAM49AQ9H0Q0 323 aaPredicted RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 SLC26A1Q9H2B4 701 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 TMEM245Q9H330 911 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 CPVLQ9H3G5 476 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 MINDY3Q9H8M7 445 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 FN3KRPQ9HA64 309 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 TREM1Q9NP99 234 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PLCXD1Q9NUJ7 323 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PKD2L2Q9NZM6 624 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PLA2G4CQ9UP65 541 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 MGAT4BQ9UQ53 548 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 KCNK6Q9Y257 313 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PHLPP2Q6ZVD8 1323 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 A0A0J9YYE9 177 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 A0A1W2PPW3 197 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 TLR4O00206 839 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 RRP8O43159 456 aaKnown RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CHMP2AO43633 222 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 DNAJB6O75190 326 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CXCL14O95715 111 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 TRBC1P01850 177 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 RPSAP08865 295 aaKnown RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 OR52Z1P0C646 297 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 IRF2P14316 349 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 DARSP14868 501 aaKnown RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CEBPBP17676 345 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 TNNI3P19429 210 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 AZGP1P25311 298 aaKnown RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CCND3P30281 292 aaPredicted RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 SLC6A12P48065 614 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 LHX1P48742 406 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CRYBB1P53674 252 aaPredicted RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CLDN8P56748 225 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 HILS1P60008 231 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 MYL6P60660 151 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 GSTO1P78417 241 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 KLC1Q07866 573 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 PDE7AQ13946 482 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 PDIA5Q14554 519 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 HERC3Q15034 1050 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 STK38Q15208 465 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 USH1GQ495M9 461 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 IQCCQ4KMZ1 466 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 SLC35D3Q5M8T2 416 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 PHYHD1Q5SRE7 291 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 LCN1P1Q5VSP4 162 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 PTRHD1Q6GMV3 140 aaKnown RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 DLEU7Q6UYE1 221 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 TPGS1Q6ZTW0 290 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 ASCL5Q7RTU5 278 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 GPR142Q7Z601 462 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 KIAA1328Q86T90 577 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CCDC60Q8IWA6 550 aaPredicted RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 MMD2Q8IY49 270 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 FAM71CQ8NEG0 241 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 GPRC5AQ8NFJ5 357 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 OR4K1Q8NGD4 311 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 OR52B4Q8NGK2 314 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 OR8J1Q8NGP2 316 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CCDC12Q8WUD4 166 aaPredicted RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 UBLCP1Q8WVY7 318 aaPredicted RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 MCUR1Q96AQ8 359 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 SPSB1Q96BD6 273 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 OTUB1Q96FW1 271 aaPredicted RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms