RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 GDPD1Q8N9F7 314 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 DENND6BQ8NEG7 585 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 FAM46DQ8NEK8 389 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 GPR156Q8NFN8 814 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 OR52K2Q8NGK3 314 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 OR5H6Q8NGV6 325 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 ENKURQ8TC29 256 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 LRRC20Q8TCA0 184 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 FRS2Q8WU20 508 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 UBTD2Q8WUN7 234 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 ASB15Q8WXK1 588 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 OR8D1Q8WZ84 308 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 GTF2H4Q92759 462 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TSACCQ96A04 125 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 FUBP1Q96AE4 644 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 REPS1Q96D71 796 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 FAM120BQ96EK7 910 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 SMARCD1Q96GM5 515 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TMEM80Q96HE8 168 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CELF6Q96J87 481 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 MAP6Q96JE9 813 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 HSH2DQ96JZ2 352 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 MAGEB10Q96LZ2 347 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 FRMD6Q96NE9 622 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TRIB3Q96RU7 358 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 COQ7Q99807 217 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 AIFM2Q9BRQ8 373 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TTYH2Q9BSA4 534 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 RHNO1Q9BSD3 238 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 MED10Q9BTT4 135 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TAPBPLQ9BX59 468 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CDCA4Q9BXL8 241 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 ZNF717Q9BY31 904 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 RNF32Q9H0A6 362 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TKTL2Q9H0I9 626 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.9□□□□□ -1.79
LIG3-211ENST00000588713 REEP1Q9H902 201 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 IL1RAPQ9NPH3 570 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PLSCR3Q9NRY6 295 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 RBM22Q9NW64 420 aaKnown RBP eCLIP3.9□□□□□ -1.792e-8■■■■■ 35.1
LIG3-211ENST00000588713 THUMPD1Q9NXG2 353 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 SLAMF8Q9P0V8 285 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 MARCH4Q9P2E8 410 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 SEC14L4Q9UDX3 406 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 OR12D3Q9UGF7 316 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 EDARQ9UNE0 448 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 POFUT2Q9Y2G5 429 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CMAHPQ9Y471 501 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PCDHGB3Q9Y5G1 929 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PCDHGA6Q9Y5G7 932 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TNPO3Q9Y5L0 923 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 CSAG2Q9Y5P2 127 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 UNC13CQ8NB66 2214 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 EPPK1P58107 5090 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 CHD3Q12873 2000 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 LOC100506127A0A0U1RQW1 187 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 A0A0X1KG70 313 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 LOC285095A0A1B0GVY8 99 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 A0A1W2PQ67 120 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 HYKKA2RU49 373 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 SH3D21A4FU49 640 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 LRRC14BA6NHZ5 514 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 YJEFN3A6XGL0 299 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 B4DXG7 233 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 NPIPB8E9PQR5 432 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ZNF670-ZNF695F2Z2N8 137 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 BTN3A1O00481 513 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 KPNA3O00505 521 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 ADAMDEC1O15204 470 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 LDB2O43679 373 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 NUDT21O43809 227 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 KIAA0513O60268 411 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 MPZL2O60487 215 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 TBL1XO60907 577 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CYP7B1O75881 506 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 OR4F21O95013 312 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PGLSO95336 258 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 TSPAN12O95859 305 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PEX11BO96011 259 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PTHP01270 115 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 EPOP01588 193 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PGRP06401 933 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CAPN1P07384 714 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PRPS2P11908 318 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 GABRB1P18505 474 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CPN2P22792 545 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PRPH2P23942 346 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 IL32P24001 234 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 MYL9P24844 172 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 MAPK1P28482 360 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CD1CP29017 333 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CCR1P32246 355 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 GRK5P34947 590 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PTGS2P35354 604 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 TGFBR1P36897 503 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 TALDO1P37837 337 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ETV3P41162 512 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PIK3CGP48736 1102 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 HTR6P50406 440 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 RENBPP51606 427 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms