RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CCDC36Q8IYA8 594 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 SLC34A3Q8N130 599 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 ZNF564Q8TBZ8 553 aaPredicted RBP3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 UBE2Q2Q8WVN8 375 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 TMEM186Q96B77 213 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 ZNF414Q96IQ9 312 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 DPH7Q9BTV6 452 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 ATG10Q9H0Y0 220 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 TMEM231Q9H6L2 316 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 PLSCR3Q9NRY6 295 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 CNOT2Q9NZN8 540 aaKnown RBP3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 IL20RAQ9UHF4 553 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 FLVCR1Q9Y5Y0 555 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 ABCC9O60706 1549 aa3.22□□□□□ -1.89
SMCHD1-204ENST00000581226 TTC26A0AVF1 554 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 FBLL1A6NHQ2 334 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ZFP92A6NM28 416 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 H0YL77 283 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ALOX15BO15296 676 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 PPIHO43447 177 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 APBB3O95704 486 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 MT-ND3P03897 115 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ALPPP05187 535 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ALPPL2P10696 532 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 PTPN6P29350 595 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 DRD3P35462 400 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ATP6V1E1P36543 226 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 STX17P56962 302 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 RFTN1Q14699 578 aaPredicted RBP3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 PDK1Q15118 436 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 UBE2V2Q15819 145 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 CYP51A1Q16850 503 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 DCAF4L1Q3SXM0 396 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ZNF544Q6NX49 715 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 NEK5Q6P3R8 708 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 BTNL3Q6UXE8 466 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 Q7L0L9 218 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 VPS36Q86VN1 386 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 KRTAP11-1Q8IUC1 163 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 FAM122AQ96E09 287 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 NUS1Q96E22 293 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 GLT8D2Q9H1C3 349 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ANAPC11Q9NYG5 84 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ADAM22Q9P0K1 906 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 NYAP2Q9P242 653 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 ABCG2Q9UNQ0 655 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 PLEKHA6Q9Y2H5 1048 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 EXOSC1Q9Y3B2 195 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 TNRQ92752 1358 aa3.21□□□□□ -1.9
SMCHD1-204ENST00000581226 CROCCQ5TZA2 2017 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 E9PMD0 336 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 H3BTX0 84 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 SGK494L7N484 410 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 SERF1AO75920 110 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 NDUFA7O95182 113 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 CCDC166P0CW27 439 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 CD1EP15812 388 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 NF2P35240 595 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 HTR5AP47898 357 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 CYBRD1Q53TN4 286 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 ZNF57Q68EA5 555 aaPredicted RBP3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 CSNK1A1LQ8N752 337 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 ADAMTS16Q8TE57 1224 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 NCLNQ969V3 563 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 SLC25A36Q96CQ1 311 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 SLC25A38Q96DW6 304 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 CYYR1Q96J86 154 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 WRAP53Q9BUR4 548 aaKnown RBP3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 C19orf24Q9BVV8 132 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 TMEM9Q9P0T7 183 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 P2RX2Q9UBL9 471 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 DUSP12Q9UNI6 340 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 CA5BQ9Y2D0 317 aa3.2□□□□□ -1.9
SMCHD1-204ENST00000581226 H0Y9J4 135 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 LGALS8O00214 317 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 TM9SF1O15321 606 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 SSX5O60225 188 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 RAMP1O60894 148 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 PGK1P00558 417 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 MT-ATP6P00846 226 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 ZP3P21754 424 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 CDH5P33151 784 aaPredicted RBP3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 TRPC1P48995 793 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 EMDP50402 254 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 SLC26A5P58743 744 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 RPS8P62241 208 aaKnown RBP3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 PLOD1Q02809 727 aaPredicted RBP3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 GAMTQ14353 236 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 PDIA5Q14554 519 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 SLC39A4Q6P5W5 647 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 MOB1BQ7L9L4 216 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 CEND1Q8N111 149 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 OR2L5Q8NG80 312 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 LINC01006Q8NI28 216 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 DQX1Q8TE96 717 aaKnown RBP3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 FCGR1BQ92637 280 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 ELMO2Q96JJ3 720 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 SPXQ9BT56 116 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 NMNAT2Q9BZQ4 307 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms