RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 GTDC1Q4AE62 458 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 MFSD12Q6NUT3 480 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 Q6ZS92 163 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 CYP4Z2PQ8N1L4 340 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 RBMXL3Q8N7X1 1067 aaKnown RBP14.31□□□□□ -0.12
SS18-216ENST00000580751 TEX19Q8NA77 164 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 GOLM1Q8NBJ4 401 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 OR2T12Q8NG77 320 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 OR52E4Q8NGH9 312 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 PNPLA2Q96AD5 504 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 SPACA9Q96E40 222 aaPredicted RBP14.31□□□□□ -0.12
SS18-216ENST00000580751 GIMAP5Q96F15 307 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 SGCZQ96LD1 299 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 ZNF583Q96ND8 569 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 KCTD14Q9BQ13 255 aaPredicted RBP14.31□□□□□ -0.12
SS18-216ENST00000580751 LMF2Q9BU23 707 aaKnown RBP14.31□□□□□ -0.12
SS18-216ENST00000580751 TRIM15Q9C019 465 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 TMEM38AQ9H6F2 299 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 Q9N2J8 555 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 GIN1Q9NXP7 522 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 ANKRD10Q9NXR5 420 aa14.31□□□□□ -0.12
SS18-216ENST00000580751 PRRC2CQ9Y520 2896 aaKnown RBP14.31□□□□□ -0.12
SS18-216ENST00000580751 H0YHG0 523 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 GMNNO75496 209 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 OR6B1O95007 311 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 HMGN2P05204 90 aaKnown RBP14.3□□□□□ -0.12
SS18-216ENST00000580751 FBXO45P0C2W1 286 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 CT45A8P0DMV1 189 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 CT45A9P0DMV2 189 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 CD46P15529 392 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 NAGAP17050 411 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 HOXB6P17509 224 aaKnown RBP14.3□□□□□ -0.12
SS18-216ENST00000580751 ABCD3P28288 659 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 GZMMP51124 257 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 MVDP53602 400 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 PSG6Q00889 435 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 PLCXD2Q0VAA5 305 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 LASP1Q14847 261 aaKnown RBP14.3□□□□□ -0.12
SS18-216ENST00000580751 ZNF169Q14929 603 aaPredicted RBP14.3□□□□□ -0.12
SS18-216ENST00000580751 CT45A2Q5DJT8 189 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 ZNF468Q5VIY5 522 aaPredicted RBP14.3□□□□□ -0.12
SS18-216ENST00000580751 SLC6A19Q695T7 634 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 C6orf120Q7Z4R8 191 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 SLC34A3Q8N130 599 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 MDS2Q8NDY4 140 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 FAM13CQ8NE31 585 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 OR5AK3PQ8NH89 298 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 JADE3Q92613 823 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 HOXB13Q92826 284 aaPredicted RBP14.3□□□□□ -0.12
SS18-216ENST00000580751 C5orf34Q96MH7 638 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 MFRPQ9BY79 579 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 ACTR3BQ9P1U1 418 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 MAGEL2Q9UJ55 1249 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 FAF1Q9UNN5 650 aaPredicted RBP14.3□□□□□ -0.12
SS18-216ENST00000580751 POMPQ9Y244 141 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 OR10H1Q9Y4A9 318 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 CSAG2Q9Y5P2 127 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 NPFFR2Q9Y5X5 522 aa14.3□□□□□ -0.12
SS18-216ENST00000580751 NUP214P35658 2090 aaPredicted RBP14.3□□□□□ -0.12
SS18-216ENST00000580751 ELOVL7A1L3X0 281 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 ACOT8O14734 319 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 ZNF354AO60765 605 aaPredicted RBP14.29□□□□□ -0.12
SS18-216ENST00000580751 NME6O75414 186 aaPredicted RBP14.29□□□□□ -0.12
SS18-216ENST00000580751 SLC25A12O75746 678 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 NEURL1O76050 574 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 ALOX5P09917 674 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 KRT20P35900 424 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 ACTR3P61158 418 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 GNA13Q14344 377 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 ZNF630Q2M218 657 aaPredicted RBP14.29□□□□□ -0.12
SS18-216ENST00000580751 ZNF791Q3KP31 576 aaPredicted RBP14.29□□□□□ -0.12
SS18-216ENST00000580751 CYP27C1Q4G0S4 372 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 MTX3Q5HYI7 312 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 C1orf146Q5VVC0 180 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 IL20RBQ6UXL0 311 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 NPSR1Q6W5P4 371 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 RTL4Q6ZR62 310 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 SLC44A2Q8IWA5 706 aaPredicted RBP14.29□□□□□ -0.12
SS18-216ENST00000580751 TMEM178AQ8NBL3 297 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 CATSPER1Q8NEC5 780 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 OR10A6Q8NH74 314 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 SLC9A6Q92581 669 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 AURKBQ96GD4 344 aaPredicted RBP14.29□□□□□ -0.12
SS18-216ENST00000580751 CLPTM1LQ96KA5 538 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 SLC35G5Q96KT7 338 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 BBC3Q96PG8 261 aaPredicted RBP14.29□□□□□ -0.12
SS18-216ENST00000580751 SIGLEC12Q96PQ1 595 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 ACTRT3Q9BYD9 372 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 IKZF5Q9H5V7 419 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 GORASP2Q9H8Y8 452 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 TIMMDC1Q9NPL8 285 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 GPATCH2Q9NW75 528 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 ANAPC2Q9UJX6 822 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 MRTO4Q9UKD2 239 aaKnown RBP14.29□□□□□ -0.12
SS18-216ENST00000580751 PCDHGB6Q9Y5F9 930 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 SNX13Q9Y5W8 968 aa14.29□□□□□ -0.12
SS18-216ENST00000580751 SMG1Q96Q15 3661 aaKnown RBP14.28□□□□□ -0.12
SS18-216ENST00000580751 ANKRD65E5RJM6 399 aa14.28□□□□□ -0.12
SS18-216ENST00000580751 TP53I11O14683 189 aa14.28□□□□□ -0.12
SS18-216ENST00000580751 ABCB7O75027 752 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms