RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 DHRS4L2Q6PKH6 230 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 C9orf40Q8IXQ3 194 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 TAGAPQ8N103 731 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 ARMC10Q8N2F6 343 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 ZSCAN1Q8NBB4 408 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 SLC35B4Q969S0 331 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 TAMM41Q96BW9 452 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 COL21A1Q96P44 957 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 PINK1Q9BXM7 581 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 ARMC7Q9H6L4 198 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 RUBCNLQ9H714 662 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 GPN2Q9H9Y4 310 aaPredicted RBP14.14□□□□□ -0.15
SS18-215ENST00000580642 SEC14L3Q9UDX4 400 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 KCNE3Q9Y6H6 103 aa14.14□□□□□ -0.15
SS18-215ENST00000580642 IGHV3-20A0A0C4DH32 117 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 LOC101059948A0A1B0GTJ6 334 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 AGAP5A6NIR3 686 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 DPM1O60762 260 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 IL33O95760 270 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 ZNF682O95780 498 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 ALPPP05187 535 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 NGFRP08138 427 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 RPS4Y1P22090 263 aaKnown RBP14.13□□□□□ -0.15
SS18-215ENST00000580642 AQP1P29972 269 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 SOX11P35716 441 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 KRT20P35900 424 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 MAGEA2P43356 314 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 KCNJ5P48544 419 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 CRYBA2P53672 197 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 KCNC4Q03721 635 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 CHRNEQ04844 493 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 LARS2Q15031 903 aaKnown RBP14.13□□□□□ -0.15
SS18-215ENST00000580642 TBC1D25Q3MII6 688 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 EIPR1Q53HC9 387 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 JMJD6Q6NYC1 403 aaPredicted RBP14.13□□□□□ -0.15
SS18-215ENST00000580642 NPSR1Q6W5P4 371 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 FRRS1Q6ZNA5 592 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 PIWIL3Q7Z3Z3 882 aaKnown RBP14.13□□□□□ -0.15
SS18-215ENST00000580642 CMIPQ8IY22 773 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 DND1Q8IYX4 353 aaKnown RBP14.13□□□□□ -0.15
SS18-215ENST00000580642 ZNF321PQ8N8H1 164 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 FBXO30Q8TB52 745 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 ADAMTS17Q8TE56 1095 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 DOK4Q8TEW6 326 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 GEMIN6Q8WXD5 167 aaKnown RBP14.13□□□□□ -0.15
SS18-215ENST00000580642 PIK3R3Q92569 461 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 C8orf44Q96CB5 159 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 RNF31Q96EP0 1072 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 HHATLQ9HCP6 504 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 IL1RAPQ9NPH3 570 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 ZNF223Q9UK11 482 aaPredicted RBP14.13□□□□□ -0.15
SS18-215ENST00000580642 DTX4Q9Y2E6 619 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 AK5Q9Y6K8 562 aa14.13□□□□□ -0.15
SS18-215ENST00000580642 TRABD2BA6NFA1 517 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 H3BNX3 289 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 KRT36O76013 467 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 SEMG1P04279 462 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 PABPC4LP0CB38 370 aaKnown RBP14.12□□□□□ -0.15
SS18-215ENST00000580642 ITGA2P17301 1181 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 PNLIPRP2P54317 469 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 FOXL2P58012 376 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 GK3PQ14409 553 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 RCN1Q15293 331 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 ZNF141Q15928 474 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 BTBD16Q32M84 506 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 LIN52Q52LA3 116 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 IFI44LQ53G44 452 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 TBCELQ5QJ74 424 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 RNF220Q5VTB9 566 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 MRGPREQ86SM8 312 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 SLC34A3Q8N130 599 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 BCORP1Q8N888 145 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 PYDC1Q8WXC3 89 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 PROX1Q92786 737 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 DIO2Q92813 273 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 SLCO4A1Q96BD0 722 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 SLC47A1Q96FL8 570 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 RMND5BQ96G75 393 aaPredicted RBP14.12□□□□□ -0.15
SS18-215ENST00000580642 ZNF354BQ96LW1 612 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 FER1L6-AS2Q96M78 137 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 CHID1Q9BWS9 393 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 DEFB126Q9BYW3 111 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 NXF5Q9H1B4 397 aaKnown RBP14.12□□□□□ -0.15
SS18-215ENST00000580642 KLHL28Q9NXS3 571 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 AURKCQ9UQB9 309 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 PTPRBP23467 1997 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 SDK2Q58EX2 2172 aa14.12□□□□□ -0.15
SS18-215ENST00000580642 TRBV11-1A0A0K0K1C0 115 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 GXYLT2A0PJZ3 443 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 OR6C70A6NIJ9 312 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 NPIPB9F8W1W9 429 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 HS6ST1O60243 411 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 FCMRO60667 390 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 SERPINA7P05543 415 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 ANPEPP15144 967 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 CD247P20963 164 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 F8A1P23610 371 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 FASP25445 335 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 OTX2P32243 289 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 TMED10P49755 219 aaKnown RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms