RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZNF248Q8NDW4 579 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 KCNE4Q8WWG9 221 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 OIT3Q8WWZ8 545 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 THAP4Q8WY91 577 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 FAM162AQ96A26 154 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 TAMM41Q96BW9 452 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 DUS3LQ96G46 650 aaKnown RBP14.91□□□□□ -0.02
SS18-211ENST00000578954 LRGUKQ96M69 825 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 DEFB126Q9BYW3 111 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 DPH1Q9BZG8 443 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 MYOTQ9UBF9 498 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 WDR45Q9Y484 360 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 OR10H1Q9Y4A9 318 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 PCDHGA10Q9Y5H3 936 aa14.91□□□□□ -0.02
SS18-211ENST00000578954 TMEM229AB2RXF0 380 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 NPIPB9F8W1W9 429 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 M0QX08 132 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 TSPAN2O60636 221 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 FCMRO60667 390 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 MFN2O95140 757 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 IFNA14P01570 189 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 CELA2AP08217 269 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 AQP1P29972 269 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 SRSF6Q13247 344 aaKnown RBP14.9□□□□□ -0.02
SS18-211ENST00000578954 NNATQ16517 81 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 DECR1Q16698 335 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 LRRC23Q53EV4 343 aaPredicted RBP14.9□□□□□ -0.02
SS18-211ENST00000578954 DCAF10Q5QP82 559 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 CCNJQ5T5M9 372 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 FIGNL1Q6PIW4 674 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 EIF3MQ7L2H7 374 aaKnown RBP14.9□□□□□ -0.02
SS18-211ENST00000578954 KRT73Q86Y46 540 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 ZNF619Q8N2I2 560 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 SLC15A4Q8N697 577 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 LMF1Q96S06 567 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 ZNF607Q96SK3 696 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 G6PC3Q9BUM1 346 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 MTHFD2LQ9H903 347 aaPredicted RBP14.9□□□□□ -0.02
SS18-211ENST00000578954 FBXO34Q9NWN3 711 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 RPS6KA6Q9UK32 745 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 MRTO4Q9UKD2 239 aaKnown RBP14.9□□□□□ -0.02
SS18-211ENST00000578954 SAMD4AQ9UPU9 718 aaKnown RBP14.9□□□□□ -0.02
SS18-211ENST00000578954 CACNA1AO00555 2505 aa14.9□□□□□ -0.02
SS18-211ENST00000578954 ZNF891A8MT65 544 aaPredicted RBP14.89□□□□□ -0.03
SS18-211ENST00000578954 SERPINA1P01009 418 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 UMPSP11172 480 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 ITGAMP11215 1152 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 NAGAP17050 411 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 ABCD3P28288 659 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 PSMD4P55036 377 aaKnown RBP14.89□□□□□ -0.03
SS18-211ENST00000578954 CYBRD1Q53TN4 286 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 IRAK1BP1Q5VVH5 260 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 TCTN3Q6NUS6 607 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 JMJD6Q6NYC1 403 aaPredicted RBP14.89□□□□□ -0.03
SS18-211ENST00000578954 LYPD8Q6UX82 237 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 OLIG3Q7RTU3 272 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 ZAR1Q86SH2 424 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 GALNT10Q86SR1 603 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 KBTBD2Q8IY47 623 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 DIO2Q92813 273 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 GATA6Q92908 595 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 TMBIM1Q969X1 311 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 FER1L6-AS2Q96M78 137 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 SPATA5L1Q9BVQ7 753 aa14.89□□□□□ -0.03
SS18-211ENST00000578954 CDC14CA4D256 554 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 AGAP5A6NIR3 686 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 H0YHG0 523 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 ZNF354AO60765 605 aaPredicted RBP14.88□□□□□ -0.03
SS18-211ENST00000578954 ENTPD5O75356 428 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 SERPINB7O75635 380 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 CAPNS1P04632 268 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 GPIP06744 558 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 THBS1P07996 1170 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 HOXB6P17509 224 aaKnown RBP14.88□□□□□ -0.03
SS18-211ENST00000578954 CD247P20963 164 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 ATP6V1C1P21283 382 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 PNLIPRP2P54317 469 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 NRG3P56975 720 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 SOX8P57073 446 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 PLCXD2Q0VAA5 305 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 AIMP2Q13155 320 aaKnown RBP14.88□□□□□ -0.03
SS18-211ENST00000578954 ZNF141Q15928 474 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 SPATA24Q86W54 205 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 C10orf67Q8IYJ2 551 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 ADGRG5Q8IZF4 528 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 TAGAPQ8N103 731 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 TMEM102Q8N9M5 508 aaPredicted RBP14.88□□□□□ -0.03
SS18-211ENST00000578954 RASSF5Q8WWW0 418 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 OMA1Q96E52 524 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 COL21A1Q96P44 957 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 RSPO3Q9BXY4 272 aaPredicted RBP14.88□□□□□ -0.03
SS18-211ENST00000578954 MAGIXQ9H6Y5 334 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 ADPRHL2Q9NX46 363 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 MKLN1Q9UL63 735 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 APC2O95996 2303 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 AKAP13Q12802 2813 aa14.88□□□□□ -0.03
SS18-211ENST00000578954 DHRS12A0PJE2 317 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 OR6C70A6NIJ9 312 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 MASP2O00187 686 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 NKX2-8O15522 239 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms