RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ACSL1P33121 698 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 RPS19P39019 145 aaKnown RBP9.43□□□□□ -0.9
VPS53-220ENST00000576149 AVPR1BP47901 424 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 SLC13A2Q13183 592 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 RUNX2Q13950 521 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 C3orf38Q5JPI3 329 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 FCRL6Q6DN72 434 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 ZNF730Q6ZMV8 503 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 FRRS1Q6ZNA5 592 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 CCDC190Q86UF4 302 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 PHC2Q8IXK0 858 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 OR2L13Q8N349 312 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 FAM83FQ8NEG4 500 aaPredicted RBP9.43□□□□□ -0.9
VPS53-220ENST00000576149 OR4K14Q8NGD5 310 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 COL26A1Q96A83 441 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 TRMT61AQ96FX7 289 aaKnown RBP9.43□□□□□ -0.9
VPS53-220ENST00000576149 MRGPRX1Q96LB2 322 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 MTHFD2LQ9H903 347 aaPredicted RBP9.43□□□□□ -0.9
VPS53-220ENST00000576149 SIAEQ9HAT2 523 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 ANKMY1Q9P2S6 941 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 DAPP1Q9UN19 280 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 TICRRQ7Z2Z1 1910 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 HYKKA2RU49 373 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 URADA6NGE7 173 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ZNF670-ZNF695F2Z2N8 137 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 WWP2O00308 870 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 CTDSP2O14595 271 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 B3GALT2O43825 422 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 DNAJB6O75190 326 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SNX4O95219 450 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 RASGRP1O95267 797 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ACP2P11117 423 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 HNRNPA2B1P22626 353 aaKnown RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 GTF2E2P29084 291 aaKnown RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 ETV5P41161 510 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ETV1P50549 477 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 RGS8P57771 180 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 RAB40BQ12829 278 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 COL9A2Q14055 689 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 DECR1Q16698 335 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ARHGAP11BQ3KRB8 267 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 DEFB134Q4QY38 66 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SLC36A4Q6YBV0 504 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 USP53Q70EK8 1073 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 RRM2BQ7LG56 351 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 PIGXQ8TBF5 258 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ZCCHC10Q8TBK6 192 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ACOT11Q8WXI4 607 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 CDS1Q92903 461 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 FAM46AQ96IP4 442 aaKnown RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 FGF20Q9NP95 211 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 PRDM9Q9NQV7 894 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 CNIH4Q9P003 139 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 CRNNQ9UBG3 495 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 ZNF229Q9UJW7 825 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 PILRAQ9UKJ1 303 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ZNF443Q9Y2A4 671 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 PCDHGB6Q9Y5F9 930 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 UNC80Q8N2C7 3258 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 IRGMA1A4Y4 181 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SNTNA6NMZ2 147 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 AP3D1O14617 1153 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 NTN1O95631 604 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 THY1P04216 161 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 CPEP16870 476 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 TLX1P31314 330 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 SOX18P35713 384 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SEPHS1P49903 392 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SRP54P61011 504 aaKnown RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 SIM1P81133 766 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 HOXC5Q00444 222 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 MLLT1Q03111 559 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 DLX2Q07687 328 aaPredicted RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 CD300CQ08708 224 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 MAP4K2Q12851 820 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ADAM15Q13444 863 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SPANXN2Q5MJ10 180 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 LIPKQ5VXJ0 399 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 TYW3Q6IPR3 259 aaKnown RBP9.42□□□□□ -0.9
VPS53-220ENST00000576149 FIGLAQ6QHK4 219 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 NKAIN4Q8IVV8 208 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 OR4N5Q8IXE1 308 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 POC5Q8NA72 575 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SIMC1Q8NDZ2 872 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ANKK1Q8NFD2 765 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 OR9Q1Q8NGQ5 310 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SLC9A6Q92581 669 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SLC38A2Q96QD8 506 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 MCHR1Q99705 422 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 KCNS3Q9BQ31 491 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 BARHL1Q9BZE3 327 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 ACTR10Q9NZ32 417 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 PTGFRNQ9P2B2 879 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 KLHL3Q9UH77 587 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SSR3Q9UNL2 185 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 NTNG1Q9Y2I2 539 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 SLC22A7Q9Y694 548 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 REV3LO60673 3130 aa9.42□□□□□ -0.9
VPS53-220ENST00000576149 RANBP2P49792 3224 aaKnown RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 OR6C74A6NCV1 312 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms