RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SLC16A11Q8NCK7 471 aa21.31■■□□□ 1
VPS53-211ENST00000571805 SCARF2Q96GP6 870 aaPredicted RBP21.31■■□□□ 1
VPS53-211ENST00000571805 FCRL4Q96PJ5 515 aa21.31■■□□□ 1
VPS53-211ENST00000571805 TOR4AQ9NXH8 423 aa21.31■■□□□ 1
VPS53-211ENST00000571805 PRKAG2Q9UGJ0 569 aa21.31■■□□□ 1
VPS53-211ENST00000571805 ATG2BQ96BY7 2078 aa21.3■■□□□ 1
VPS53-211ENST00000571805 ATG2AQ2TAZ0 1938 aa21.3■■□□□ 1
VPS53-211ENST00000571805 NARSO43776 548 aaKnown RBP21.3■■□□□ 1
VPS53-211ENST00000571805 LALBAP00709 142 aa21.3■■□□□ 1
VPS53-211ENST00000571805 IFITM2Q01629 132 aa21.3■■□□□ 1
VPS53-211ENST00000571805 RSBN1Q5VWQ0 802 aaPredicted RBP21.3■■□□□ 1
VPS53-211ENST00000571805 FRRS1Q6ZNA5 592 aa21.3■■□□□ 1
VPS53-211ENST00000571805 GDF7Q7Z4P5 450 aa21.3■■□□□ 1
VPS53-211ENST00000571805 LHFPL3Q86UP9 236 aa21.3■■□□□ 1
VPS53-211ENST00000571805 OR7G2Q8NG99 324 aa21.3■■□□□ 1
VPS53-211ENST00000571805 OR14C36Q8NHC7 312 aa21.3■■□□□ 1
VPS53-211ENST00000571805 ADAMTS15Q8TE58 950 aa21.3■■□□□ 1
VPS53-211ENST00000571805 OSTF1Q92882 214 aa21.3■■□□□ 1
VPS53-211ENST00000571805 ZNF486Q96H40 463 aaPredicted RBP21.3■■□□□ 1
VPS53-211ENST00000571805 ZNF649Q9BS31 505 aa21.3■■□□□ 1
VPS53-211ENST00000571805 PRRG3Q9BZD7 231 aa21.3■■□□□ 1
VPS53-211ENST00000571805 FGF22Q9HCT0 170 aa21.3■■□□□ 1
VPS53-211ENST00000571805 KLHL28Q9NXS3 571 aa21.3■■□□□ 1
VPS53-211ENST00000571805 NTMQ9P121 344 aa21.3■■□□□ 1
VPS53-211ENST00000571805 SEC14L5O43304 696 aa21.3■■□□□ 1
VPS53-211ENST00000571805 RNGTTO60942 597 aaKnown RBP21.3■■□□□ 1
VPS53-211ENST00000571805 CH25HO95992 272 aa21.3■■□□□ 1
VPS53-211ENST00000571805 SLC1A3P43003 542 aa21.3■■□□□ 1
VPS53-211ENST00000571805 CDH11P55287 796 aa21.3■■□□□ 1
VPS53-211ENST00000571805 ZNF776Q68DI1 518 aaPredicted RBP21.3■■□□□ 1
VPS53-211ENST00000571805 ZNF517Q6ZMY9 492 aaPredicted RBP21.3■■□□□ 1
VPS53-211ENST00000571805 OR4E2Q8NGC2 313 aa21.3■■□□□ 1
VPS53-211ENST00000571805 DIRAS2Q96HU8 199 aa21.3■■□□□ 1
VPS53-211ENST00000571805 MCHR1Q99705 422 aa21.3■■□□□ 1
VPS53-211ENST00000571805 NEK6Q9HC98 313 aa21.3■■□□□ 1
VPS53-211ENST00000571805 FABP12A6NFH5 140 aa21.29■■□□□ 1
VPS53-211ENST00000571805 RFXAPO00287 272 aa21.29■■□□□ 1
VPS53-211ENST00000571805 PLRG1O43660 514 aaKnown RBP21.29■■□□□ 1
VPS53-211ENST00000571805 EML2O95834 649 aa21.29■■□□□ 1
VPS53-211ENST00000571805 IFNA8P32881 189 aa21.29■■□□□ 1
VPS53-211ENST00000571805 SOX18P35713 384 aa21.29■■□□□ 1
VPS53-211ENST00000571805 RGS8P57771 180 aaPredicted RBP21.29■■□□□ 1
VPS53-211ENST00000571805 SCN1BQ07699 218 aa21.29■■□□□ 1
VPS53-211ENST00000571805 SF3B4Q15427 424 aaKnown RBP eCLIP21.29■■□□□ 15e-6■■■■■ 28.2
VPS53-211ENST00000571805 FAM214AQ32MH5 1076 aa21.29■■□□□ 1
VPS53-211ENST00000571805 MFSD12Q6NUT3 480 aa21.29■■□□□ 1
VPS53-211ENST00000571805 ZFP41Q8N8Y5 198 aa21.29■■□□□ 1
VPS53-211ENST00000571805 OR4F15Q8NGB8 312 aa21.29■■□□□ 1
VPS53-211ENST00000571805 GANCQ8TET4 914 aa21.29■■□□□ 1
VPS53-211ENST00000571805 GAL3ST3Q96A11 431 aa21.29■■□□□ 1
VPS53-211ENST00000571805 MKRN2Q9H000 416 aaKnown RBP21.29■■□□□ 1
VPS53-211ENST00000571805 SMIM30A4D0T7 59 aa21.29■■□□□ 1
VPS53-211ENST00000571805 CSF3P09919 207 aa21.29■■□□□ 1
VPS53-211ENST00000571805 MAT2AP31153 395 aaKnown RBP21.29■■□□□ 1
VPS53-211ENST00000571805 GPR4P46093 362 aa21.29■■□□□ 1
VPS53-211ENST00000571805 ZNF155Q12901 538 aaPredicted RBP21.29■■□□□ 1
VPS53-211ENST00000571805 ASAH1Q13510 395 aa21.29■■□□□ 1
VPS53-211ENST00000571805 TAB1Q15750 504 aa21.29■■□□□ 1
VPS53-211ENST00000571805 ZNF628Q5EBL2 1059 aa21.29■■□□□ 1
VPS53-211ENST00000571805 DDI2Q5TDH0 399 aa21.29■■□□□ 1
VPS53-211ENST00000571805 PLEKHM3Q6ZWE6 761 aa21.29■■□□□ 1
VPS53-211ENST00000571805 MBOAT2Q6ZWT7 520 aa21.29■■□□□ 1
VPS53-211ENST00000571805 MTSS1LQ765P7 747 aa21.29■■□□□ 1
VPS53-211ENST00000571805 AMIGO1Q86WK6 493 aa21.29■■□□□ 1
VPS53-211ENST00000571805 RAB43Q86YS6 212 aa21.29■■□□□ 1
VPS53-211ENST00000571805 NRMQ8IXM6 262 aa21.29■■□□□ 1
VPS53-211ENST00000571805 CDS1Q92903 461 aa21.29■■□□□ 1
VPS53-211ENST00000571805 RFKQ969G6 155 aa21.29■■□□□ 1
VPS53-211ENST00000571805 SLC41A3Q96GZ6 507 aa21.29■■□□□ 1
VPS53-211ENST00000571805 TBC1D29Q9UFV1 150 aa21.29■■□□□ 1
VPS53-211ENST00000571805 KLF15Q9UIH9 416 aa21.29■■□□□ 1
VPS53-211ENST00000571805 HEBP2Q9Y5Z4 205 aa21.29■■□□□ 1
VPS53-211ENST00000571805 COLEC10Q9Y6Z7 277 aa21.29■■□□□ 1
VPS53-211ENST00000571805 DUXAA6NLW8 204 aa21.28■■□□□ 1
VPS53-211ENST00000571805 COQ9O75208 318 aa21.28■■□□□ 1
VPS53-211ENST00000571805 ZNF888P0CJ79 500 aaPredicted RBP21.28■■□□□ 1
VPS53-211ENST00000571805 PUS10Q3MIT2 529 aaKnown RBP21.28■■□□□ 1
VPS53-211ENST00000571805 GDPD1Q8N9F7 314 aa21.28■■□□□ 1
VPS53-211ENST00000571805 Q8N9G6 341 aaPredicted RBP21.28■■□□□ 1
VPS53-211ENST00000571805 SIMC1Q8NDZ2 872 aa21.28■■□□□ 1
VPS53-211ENST00000571805 TMEM255BQ8WV15 326 aa21.28■■□□□ 1
VPS53-211ENST00000571805 OR6C2Q9NZP2 312 aa21.28■■□□□ 1
VPS53-211ENST00000571805 ZNF443Q9Y2A4 671 aaPredicted RBP21.28■■□□□ 1
VPS53-211ENST00000571805 EXOGQ9Y2C4 368 aaKnown RBP21.28■■□□□ 1
VPS53-211ENST00000571805 GSTK1Q9Y2Q3 226 aa21.28■■□□□ 1
VPS53-211ENST00000571805 LINC00854A0A1B0GVQ3 168 aa21.28■■□□□ 1
VPS53-211ENST00000571805 TRDV1A0A1B0GX56 115 aa21.28■■□□□ 1
VPS53-211ENST00000571805 GSAPA4D1B5 854 aa21.28■■□□□ 1
VPS53-211ENST00000571805 GRXCR1A8MXD5 290 aa21.28■■□□□ 1
VPS53-211ENST00000571805 PIP5K1CO60331 668 aa21.28■■□□□ 1
VPS53-211ENST00000571805 TYW3Q6IPR3 259 aaKnown RBP21.28■■□□□ 1
VPS53-211ENST00000571805 CDC73Q6P1J9 531 aa21.28■■□□□ 1
VPS53-211ENST00000571805 ZNF620Q6ZNG0 422 aa21.28■■□□□ 1
VPS53-211ENST00000571805 YAF2Q8IY57 180 aa21.28■■□□□ 1
VPS53-211ENST00000571805 LCN9Q8WX39 176 aa21.28■■□□□ 1
VPS53-211ENST00000571805 FAM131CQ96AQ9 280 aa21.28■■□□□ 1
VPS53-211ENST00000571805 DCLRE1CQ96SD1 692 aaKnown RBP21.28■■□□□ 1
VPS53-211ENST00000571805 SLC6A17Q9H1V8 727 aa21.28■■□□□ 1
VPS53-211ENST00000571805 MTHFD2LQ9H903 347 aaPredicted RBP21.28■■□□□ 1
VPS53-211ENST00000571805 MED17Q9NVC6 651 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms