RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SLC35A4Q96G79 324 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 C16orf58Q96GQ5 468 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 FBXL20Q96IG2 436 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 CCDC74BQ96LY2 380 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 OR6C1Q96RD1 312 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 SDF2Q99470 211 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 CMKLR1Q99788 373 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 FNDC11Q9BVV2 318 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ZNF350Q9GZX5 532 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 OR10A5Q9H207 317 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 SLC26A1Q9H2B4 701 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 SLC38A1Q9H2H9 487 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 EQTNQ9NQ60 294 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 PDP1Q9P0J1 537 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 COPS7AQ9UBW8 275 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 KCND3Q9UK17 655 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 MGAT4BQ9UQ53 548 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 MYRFQ9Y2G1 1151 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 POFUT2Q9Y2G5 429 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 PCDHGA1Q9Y5H4 931 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 HEMK1Q9Y5R4 338 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 U3KQA8 63 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 DOCK9Q9BZ29 2069 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 CHD6Q8TD26 2715 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ZFHX2Q9C0A1 2572 aaPredicted RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 IGKV3D-11A0A0A0MRZ8 115 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 TCRBV16S1A1N1A0A5B0 115 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 C7orf72A4D263 438 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 AGAP5A6NIR3 686 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 D6RAR5 112 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 hCG_2039718K7EN88 272 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 PDLIM1O00151 329 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 HS6ST1O60243 411 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 BRINP1O60477 761 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 MPZL2O60487 215 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CPNE3O75131 537 aaKnown RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 UGT2B17O75795 530 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 OR5F1O95221 314 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 ADAP00813 363 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 IGHEP01854 428 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 H1F0P07305 194 aaKnown RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 LYNP07948 512 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CHRM4P08173 479 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 GSTM3P21266 225 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 GABRA3P34903 492 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 RYKP34925 604 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 PPICP45877 212 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CRYBA2P53672 197 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CASP9P55211 416 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 ESRRGP62508 458 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 RPS26P62854 115 aaKnown RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 MC2RQ01718 297 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 SPIBQ01892 262 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CHRNEQ04844 493 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 DUSP2Q05923 314 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 BLMHQ13867 455 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 COL9A2Q14055 689 aaPredicted RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 ZNF267Q14586 743 aaPredicted RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 KCNAB1Q14722 419 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 NSDHLQ15738 373 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 DUSP5Q16690 384 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 DECR1Q16698 335 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS39-213ENST00000570062 MINDY4Q4G0A6 757 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 IQCCQ4KMZ1 466 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 NKAIN1Q4KMZ8 207 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 PHF19Q5T6S3 580 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 HLA-DQA1Q5Y7H0 255 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 KDM4DQ6B0I6 523 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 TCTN3Q6NUS6 607 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 FAHD1Q6P587 224 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 FAM111BQ6SJ93 734 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 RBM44Q6ZP01 1051 aaKnown RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 ZNF550Q7Z398 422 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 DGLUCYQ7Z3D6 616 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 TSPYL5Q86VY4 417 aaPredicted RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 CARM1Q86X55 608 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 GRAMD2AQ8IUY3 354 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CHERPQ8IWX8 916 aaKnown RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 C8orf59Q8N0T1 100 aaPredicted RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 DEPDC4Q8N2C3 294 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 PARP8Q8N3A8 854 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 SMYD1Q8NB12 490 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 SLC16A11Q8NCK7 471 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 TMEM52Q8NDY8 209 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CDS1Q92903 461 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 SLC38A4Q969I6 547 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 TP53INP1Q96A56 240 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 NACC2Q96BF6 587 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 DHRS1Q96LJ7 313 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 PRRC1Q96M27 445 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 ALPK1Q96QP1 1244 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 CCNL2Q96S94 520 aaPredicted RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 ARHGDIGQ99819 225 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 YIPF4Q9BSR8 244 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 TEX12Q9BXU0 123 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 AMBRA1Q9C0C7 1298 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 B3GNT4Q9C0J1 378 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 ING2Q9H160 280 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms