RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ZNF500O60304 480 aaPredicted RBP13.49□□□□□ -0.25
CLN3-213ENST00000565047 IL33O95760 270 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 NTSP30990 170 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 EVI2BP34910 448 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 CLDN15P56746 228 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 CLDN18P56856 261 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 TOMM20Q15388 145 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 APOOLQ6UXV4 268 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 ZCCHC23Q6ZST2 131 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 C9orf106Q8NAJ2 232 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 FAM110BQ8TC76 370 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 TWIST2Q8WVJ9 160 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 GFM2Q969S9 779 aaKnown RBP13.49□□□□□ -0.25
CLN3-213ENST00000565047 TSSK3Q96PN8 268 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 TUBA1CQ9BQE3 449 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 DDX18Q9NVP1 670 aaKnown RBP13.49□□□□□ -0.25
CLN3-213ENST00000565047 TAS2R10Q9NYW0 307 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 SENP1Q9P0U3 644 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 GIMAP2Q9UG22 337 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 ZDHHC2Q9UIJ5 367 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 CAMK2AQ9UQM7 478 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 FIS1Q9Y3D6 152 aa13.49□□□□□ -0.25
CLN3-213ENST00000565047 CELSR1Q9NYQ6 3014 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 GXYLT2A0PJZ3 443 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 PDPK1O15530 556 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 NKX2-2O95096 273 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 SLU7O95391 586 aaKnown RBP13.48□□□□□ -0.25
CLN3-213ENST00000565047 BPGMP07738 259 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 ZNF708P17019 499 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 BMP5P22003 454 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 IL12BP29460 328 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 SERPINB5P36952 375 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 STARP49675 285 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 ZNF155Q12901 538 aaPredicted RBP13.48□□□□□ -0.25
CLN3-213ENST00000565047 TNFAIP8L3Q5GJ75 292 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 ARSKQ6UWY0 536 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 HOMEZQ8IX15 550 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 OR2M3Q8NG83 312 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 OR14L1PQ8NHC6 308 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 CLHC1Q8NHS4 586 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 TRIB1Q96RU8 372 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 SIRT3Q9NTG7 399 aaPredicted RBP13.48□□□□□ -0.25
CLN3-213ENST00000565047 ACSS1Q9NUB1 689 aaPredicted RBP13.48□□□□□ -0.25
CLN3-213ENST00000565047 ATP6V1HQ9UI12 483 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 ABCG2Q9UNQ0 655 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 OR10H1Q9Y4A9 318 aa13.48□□□□□ -0.25
CLN3-213ENST00000565047 ZNF469Q96JG9 3925 aaPredicted RBP13.47□□□□□ -0.25
CLN3-213ENST00000565047 IGLV3-32A0A0A0MS00 114 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 TTC36A6NLP5 189 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 AKAP10O43572 662 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 HCRTR2O43614 444 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 RCBTB2O95199 551 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 IL18BPO95998 194 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 IL2RAP01589 272 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 PRPS2P11908 318 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 CHMP24386 653 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 KRT20P35900 424 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 RPL38P63173 70 aaKnown RBP13.47□□□□□ -0.25
CLN3-213ENST00000565047 MRPS22P82650 360 aaKnown RBP13.47□□□□□ -0.25
CLN3-213ENST00000565047 ZNF844Q08AG5 666 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 FOXF2Q12947 444 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 HSPB3Q12988 150 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 SNTB1Q13884 538 aaKnown RBP13.47□□□□□ -0.25
CLN3-213ENST00000565047 MLC1Q15049 377 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 SF3B4Q15427 424 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLN3-213ENST00000565047 BCL2A1Q16548 175 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 PLXDC2Q6UX71 529 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 IFNEQ86WN2 208 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 NUDT8Q8WV74 236 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 MTERF3Q96E29 417 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 PARD6BQ9BYG5 372 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 IQCGQ9H095 443 aaKnown RBP13.47□□□□□ -0.25
CLN3-213ENST00000565047 EML4Q9HC35 981 aaKnown RBP13.47□□□□□ -0.25
CLN3-213ENST00000565047 Q9N2J8 555 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 FAM120CQ9NX05 1096 aaKnown RBP13.47□□□□□ -0.25
CLN3-213ENST00000565047 CLCF1Q9UBD9 225 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLN3-213ENST00000565047 RAB21Q9UL25 225 aa13.47□□□□□ -0.25
CLN3-213ENST00000565047 V9GYY5 206 aaPredicted RBP13.47□□□□□ -0.25
CLN3-213ENST00000565047 CTAG2O75638 210 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 CHEK2O96017 543 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 ACP2P11117 423 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 CTSSP25774 331 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 DPP4P27487 766 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 GABRA3P34903 492 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 ASCL1P50553 236 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 AGFG1P52594 562 aaKnown RBP13.46□□□□□ -0.25
CLN3-213ENST00000565047 DSCR4P56555 118 aaPredicted RBP13.46□□□□□ -0.25
CLN3-213ENST00000565047 PRR5P85299 388 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 IFFO1Q0D2I5 559 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 DECR1Q16698 335 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 TMEM44Q2T9K0 475 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 GALNTL6Q49A17 601 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 C6orf136Q5SQH8 315 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 SH2D4BQ5SQS7 431 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 MARCH3Q86UD3 253 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 NUP43Q8NFH3 380 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 PSMA8Q8TAA3 256 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 PIK3R3Q92569 461 aa13.46□□□□□ -0.25
CLN3-213ENST00000565047 RNASE6Q93091 150 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms