RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 REM2Q8IYK8 340 aaPredicted RBP12.38□□□□□ -0.43
CLN3-210ENST00000563874 ELMOD2Q8IZ81 293 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 KLHL36Q8N4N3 616 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 LINC01555Q8NAE3 123 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 BBS10Q8TAM1 723 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 SUN3Q8TAQ9 357 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 GNPDA2Q8TDQ7 276 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 NXPE3Q969Y0 559 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 ZC3HAV1LQ96H79 300 aaKnown RBP12.38□□□□□ -0.43
CLN3-210ENST00000563874 KCNJ15Q99712 375 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 SPATA5L1Q9BVQ7 753 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 LGR4Q9BXB1 951 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.38□□□□□ -0.43
CLN3-210ENST00000563874 LIPT1Q9Y234 373 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 CDH10Q9Y6N8 788 aa12.38□□□□□ -0.43
CLN3-210ENST00000563874 C17orf113A0A1B0GUU1 675 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 C4orf51C9J302 202 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 TBX19O60806 448 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 NTSP30990 170 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 OR3A3P47888 321 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 TAS2R38P59533 333 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 MAB21L1Q13394 359 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 TNK1Q13470 666 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 DSG2Q14126 1118 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 SF3A2Q15428 464 aaKnown RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 RNASE12Q5GAN4 147 aaKnown RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 EOGTQ5NDL2 527 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 AADACL4Q5VUY2 407 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 FAM205BPQ63HN1 556 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 SFTPA1Q8IWL2 248 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 SIRT6Q8N6T7 355 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 NIPAL2Q9H841 368 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 MED20Q9H944 212 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 SLC28A3Q9HAS3 691 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 ATG4BQ9Y4P1 393 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 SIRT4Q9Y6E7 314 aaPredicted RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 TRAV6A0A075B6T7 132 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 IRGMA1A4Y4 181 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 CACNB4O00305 520 aaPredicted RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 SURF4O15260 269 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 TFPIP10646 304 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 UQCRC1P31930 480 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 AHRP35869 848 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 OMPP47874 163 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 RNF144AP50876 292 aaPredicted RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 STXBP1P61764 594 aaKnown RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 REEP5Q00765 189 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 GPR176Q14439 515 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 C9orf64Q5T6V5 341 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 BCL2L15Q5TBC7 163 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 TIGD3Q6B0B8 471 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 CPOQ8IVL8 374 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 GHDCQ8N2G8 530 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 LINC00471Q8N535 108 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 NATD1Q8N6N6 113 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 POGLUT1Q8NBL1 392 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 CNRIP1Q96F85 164 aaPredicted RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 ZNF514Q96K75 400 aaPredicted RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 ZNF649Q9BS31 505 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 PPIL3Q9H2H8 161 aaKnown RBP12.37□□□□□ -0.43
CLN3-210ENST00000563874 ISYNA1Q9NPH2 558 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 TAS2R7Q9NYW3 318 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 CLEC4AQ9UMR7 237 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 COL4A3Q01955 1670 aa12.37□□□□□ -0.43
CLN3-210ENST00000563874 A0A1W2PPV9 198 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 A0A1W2PQ72 361 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 FCMRO60667 390 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ICMTO60725 284 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 CRYZL1O95825 349 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 FUT1P19526 365 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 CLCNKAP51800 687 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 CLDN2P57739 230 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ADAM15Q13444 863 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 TRAM2Q15035 370 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 C18orf63Q68DL7 685 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 MZT2AQ6P582 158 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 SMARCD3Q6STE5 483 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 TRILQ7L0X0 811 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 KRT74Q7RTS7 529 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 AMIGO1Q86WK6 493 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 OR5K2Q8NHB8 316 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 TMEM255BQ8WV15 326 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 AKAP1Q92667 903 aaKnown RBP eCLIP12.36□□□□□ -0.43
CLN3-210ENST00000563874 LRIG1Q96JA1 1093 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 LINC00615Q96LM1 132 aaPredicted RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 ZBP1Q9H171 429 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 PELI2Q9HAT8 420 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 POLMQ9NP87 494 aaPredicted RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 WASH6PQ9NQA3 447 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 CHST2Q9Y4C5 530 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 LRRK1Q38SD2 2015 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 A0A0A6YYD5 115 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 MAN2B1O00754 1011 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 FABP7O15540 132 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 ERI3O43414 337 aaKnown RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 SLC43A1O75387 559 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 PCCBP05166 539 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 MC3RP41968 323 aa12.36□□□□□ -0.43
CLN3-210ENST00000563874 SRP9P49458 86 aaKnown RBP12.36□□□□□ -0.43
CLN3-210ENST00000563874 CSNK1G2P78368 415 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms