RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 LHX3Q9UBR4 397 aa4.75□□□□□ -1.65
VPS35P1-201ENST00000563400 HMGXB4Q9UGU5 601 aa4.75□□□□□ -1.65
VPS35P1-201ENST00000563400 LOXL2Q9Y4K0 774 aa4.75□□□□□ -1.65
VPS35P1-201ENST00000563400 CSDC2Q9Y534 153 aaKnown RBP4.75□□□□□ -1.65
VPS35P1-201ENST00000563400 DOCK3Q8IZD9 2030 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PARP14Q460N5 1801 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 LOC105371242A0A075B767 164 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 CCDC162PA2VCL2 907 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ANTXRLA6NF34 631 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 TRPC5OSA6NMA1 111 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 MARCH11A6NNE9 402 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 C17orf105B2RV13 164 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 DIRC3C9JPN6 131 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 E5RGE8 158 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 E7ENQ6 273 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 NPIPA3F8WFD2 350 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PRRG2O14669 202 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 SYT7O43581 403 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 SNX3O60493 162 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ZNF623O75123 536 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 NCR1O76036 304 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 TSPAN12O95859 305 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 WDPCPO95876 746 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 CCL2P13500 99 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 IRF2P14316 349 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ARL2P36404 184 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 NDST1P52848 882 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PEX3P56589 373 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 NME3Q13232 169 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 SYPL1Q16563 259 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ZSWIM7Q19AV6 140 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 MICBQ29980 383 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 LRRC26Q2I0M4 334 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PAGE2BQ5JRK9 111 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ENTPD8Q5MY95 495 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 VWA1Q6PCB0 445 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 COLCA1Q6ZS62 124 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ZNF367Q7RTV3 350 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 DPY19L4Q7Z388 723 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 FJX1Q86VR8 437 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PARGQ86W56 976 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 COMMD2Q86X83 199 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 LRRC8AQ8IWT6 810 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 CHERPQ8IWX8 916 aaKnown RBP4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 C12orf56Q8IXR9 622 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 MICU2Q8IYU8 434 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 FAM58AQ8N1B3 248 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 SLC5A8Q8N695 610 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 C4orf32Q8N8J7 132 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 MLKLQ8NB16 471 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 OR4K1Q8NGD4 311 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 OR6S1Q8NH40 331 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 M1APQ8TC57 530 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 NRGNQ92686 78 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 RND1Q92730 232 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PINX1Q96BK5 328 aaKnown RBP4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 P2RY11Q96G91 374 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ELMO2Q96JJ3 720 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 TSNARE1Q96NA8 513 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 FCRL5Q96RD9 977 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 BTBD10Q9BSF8 475 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 TM2D2Q9BX73 214 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 POLR3FQ9H1D9 316 aaPredicted RBP4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 GANQ9H2C0 597 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ADNPQ9H2P0 1102 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 C5orf66Q9H5L9 145 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ASB7Q9H672 318 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 MCCC2Q9HCC0 563 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 LYRM4Q9HD34 91 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 POLE4Q9NR33 117 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 MAN2C1Q9NTJ4 1040 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 UFSP2Q9NUQ7 469 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 EURLQ9NYK6 297 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 SMARCAL1Q9NZC9 954 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 EMC3Q9P0I2 261 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 UXTQ9UBK9 157 aaPredicted RBP4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PITPNC1Q9UKF7 332 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 TBX21Q9UL17 535 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 EMCNQ9ULC0 261 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 SATB2Q9UPW6 733 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PRELID1Q9Y255 219 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 NCKAP1Q9Y2A7 1128 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 NSG2Q9Y328 171 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 PPIL1Q9Y3C6 166 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 DMRT1Q9Y5R6 373 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 ASTN1O14525 1302 aa4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 RBBP6Q7Z6E9 1792 aaKnown RBP4.74□□□□□ -1.65
VPS35P1-201ENST00000563400 GOLGA8QA0A0J9YX86 632 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 ZNF233A6NK53 670 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 P2RY10O00398 339 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 DLGAP1O14490 977 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 N4BP1O75113 896 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 NDUFB4O95168 129 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 LCA5LO95447 670 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 H6PDO95479 791 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 HPRP00739 348 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 WNT1P04628 370 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 ERCC1P07992 297 aaPredicted RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 ANXA4P09525 319 aaPredicted RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms