RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TCRBP04435 133 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ELK1P19419 428 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ITPKAP23677 461 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ATP5A1P25705 553 aaKnown RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 EIF1P41567 113 aaKnown RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 NSG1P42857 185 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 GDF5P43026 501 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 KCNJ3P48549 501 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 B4GALNT1Q00973 533 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 C1DQ13901 141 aaKnown RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 SGCAQ16586 387 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ZNF528Q3MIS6 628 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 SPIN4Q56A73 249 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 C5orf46Q6UWT4 87 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 HSD17B13Q7Z5P4 300 aaPredicted RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 JAZF1Q86VZ6 243 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 RGL4Q8IZJ4 473 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 PROKR2Q8NFJ6 384 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 OR2A12Q8NGT7 310 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 MAL2Q969L2 176 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 SLC6A18Q96N87 628 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 TSSK3Q96PN8 268 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 COPS8Q99627 209 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 TREX2Q9BQ50 279 aaPredicted RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 LRTM1Q9HBL6 345 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ZDHHC3Q9NYG2 299 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 WWOXQ9NZC7 414 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 OR6C2Q9NZP2 312 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ZNF624Q9P2J8 865 aaPredicted RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 KLHL42Q9P2K6 505 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 EXTL2Q9UBQ6 330 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 PPIL1Q9Y3C6 166 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 KIAA1549LQ6ZVL6 1849 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 CXorf51AA0A1B0GTR3 108 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 J3KTA2 159 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 CASC3O15234 703 aaKnown RBP12.5□□□□□ -0.41
CLK3-206ENST00000562078 ST8SIA5O15466 376 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 TAPBPO15533 448 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 DPM1O60762 260 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 RLN2P04090 185 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 HIST1H2AGP0C0S8 130 aaPredicted RBP12.5□□□□□ -0.41
CLK3-206ENST00000562078 H2AFB1P0C5Y9 115 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 H2AFB2P0C5Z0 115 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 CPEP16870 476 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 HIST1H2ADP20671 130 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 VIPR1P32241 457 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 FABP5Q01469 135 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 ZSWIM7Q19AV6 140 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 Q3ZCU0 254 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 HIST2H2AA3Q6FI13 130 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 UNC5DQ6UXZ4 953 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 GDPD4Q6W3E5 623 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 ZNF687Q8N1G0 1237 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 ZNF527Q8NB42 609 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 OR1S1Q8NH92 325 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 HIST1H2AHQ96KK5 128 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 HIST1H2AJQ99878 128 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 CMSS1Q9BQ75 279 aaKnown RBP12.5□□□□□ -0.41
CLK3-206ENST00000562078 SEMA4CQ9C0C4 833 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 SHISA3A0PJX4 238 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 ZAR1LA6NP61 321 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 CHURC1-FNTBB4DL54 471 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 GNB5O14775 395 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 LINC01565O15544 149 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 EEF1E1O43324 174 aaKnown RBP12.5□□□□□ -0.41
CLK3-206ENST00000562078 TACR1P25103 407 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 GIFP27352 417 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 HSD17B2P37059 387 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 PREPP48147 710 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 PUM1Q14671 1186 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLK3-206ENST00000562078 GSG1Q2KHT4 349 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 PAN3Q58A45 887 aaKnown RBP12.5□□□□□ -0.41
CLK3-206ENST00000562078 TCEAL5Q5H9L2 206 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 MCATQ8IVS2 390 aaKnown RBP12.5□□□□□ -0.41
CLK3-206ENST00000562078 ZFP41Q8N8Y5 198 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 RFT1Q96AA3 541 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 SGK3Q96BR1 496 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 MRPL48Q96GC5 212 aaKnown RBP12.5□□□□□ -0.41
CLK3-206ENST00000562078 C12orf66Q96MD2 445 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 DNAJC11Q9NVH1 559 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 FTSJ1Q9UET6 329 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 MBD1Q9UIS9 605 aaPredicted RBP12.5□□□□□ -0.41
CLK3-206ENST00000562078 SLC6A5Q9Y345 797 aa12.5□□□□□ -0.41
CLK3-206ENST00000562078 SZT2Q5T011 3432 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 OTCP00480 354 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 EGFP01133 1207 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 HPXP02790 462 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 IGFBP1P08833 259 aaPredicted RBP12.49□□□□□ -0.41
CLK3-206ENST00000562078 MMP12P39900 470 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 SPINT3P49223 89 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 CCR6P51684 374 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 HYAL1Q12794 435 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 MAD2L1Q13257 205 aaPredicted RBP12.49□□□□□ -0.41
CLK3-206ENST00000562078 INSL4Q14641 139 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 OR2G6Q5TZ20 316 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 METTL11BQ5VVY1 283 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 DBX2Q6ZNG2 339 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 LAPTM4BQ86VI4 370 aa12.49□□□□□ -0.41
CLK3-206ENST00000562078 C1orf52Q8N6N3 182 aaKnown RBP12.49□□□□□ -0.41
CLK3-206ENST00000562078 CELF5Q8N6W0 485 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms