RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FUZQ9BT04 418 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 ZNF69Q9UC07 566 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 CCL26Q9Y258 94 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 ANKRD61A6NGH8 418 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 SLC9B1P1A6NJY1 282 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 PLPP1O14494 284 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 SIX6O95475 246 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 IFNA7P01567 189 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 TCRBP04435 133 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 PRPH2P23942 346 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 GRPRP30550 384 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 MAGEB1P43366 347 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 SMIM11AP58511 58 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 C19orf57Q0VDD7 668 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 GARNL3Q5VVW2 1013 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 C12orf73Q69YU5 71 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 IDO2Q6ZQW0 420 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 C17orf64Q86WR6 236 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 ANGPTL6Q8NI99 470 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 SEC22CQ9BRL7 303 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 RHBGQ9H310 441 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 CCDC86Q9H6F5 360 aaKnown RBP10.65□□□□□ -0.71
LDLR-208ENST00000558518 AUNIPQ9H7T9 357 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 BRF2Q9HAW0 419 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 A4GNTQ9UNA3 340 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 PCDHGB7Q9Y5F8 929 aa10.65□□□□□ -0.71
LDLR-208ENST00000558518 NPIPA5A0A0B4J1W7 369 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 NPIPA7E9PJI5 369 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 MMP20O60882 483 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 POP7O75817 140 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 RAF1P04049 648 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 HMGN2P05204 90 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 NPIPA8P0DM63 369 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 SAGP10523 405 aaPredicted RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 POLR2CP19387 275 aaPredicted RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 KCNJ5P48544 419 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 PITPNBP48739 271 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 MAP2K6P52564 334 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 LIMK1P53667 647 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 ID2Q02363 134 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 SP140Q13342 867 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 SNTB2Q13425 540 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 TRIM71Q2Q1W2 868 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 NXPE4Q6UWF7 544 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 FBXO15Q8NCQ5 510 aaPredicted RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 OR4D9Q8NGE8 314 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 ZNF461Q8TAF7 563 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 GINS4Q9BRT9 223 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 MARVELD1Q9BSK0 173 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 EFCAB11Q9BUY7 163 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 POLDIP3Q9BY77 421 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 DPH1Q9BZG8 443 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 PLXNA4Q9HCM2 1894 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 B3GNT2Q9NY97 397 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 AHSPQ9NZD4 102 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 GPR55Q9Y2T6 319 aaPredicted RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 SIRT4Q9Y6E7 314 aaPredicted RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 SCN8AQ9UQD0 1980 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 FXYD6-FXYD2A0A087WZ82 144 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 E9PI62 339 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 PITPNM1O00562 1244 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 B4GALT2O60909 372 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 APOC3P02656 99 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 H2AFB2P0C5Z0 115 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 CLUP10909 449 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 PCBP3P57721 371 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 TAP2Q03519 686 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 TNK1Q13470 666 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 GRK1Q15835 563 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 C11orf88Q6PI97 169 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 NR2C2APQ86WQ0 139 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 TMEM99Q8N816 258 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 SRFBP1Q8NEF9 429 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 GLYATL1Q969I3 302 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 PDXPQ96GD0 296 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 ZCCHC2Q9C0B9 1178 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 FXYD6Q9H0Q3 95 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 PIGUQ9H490 435 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 FOLH1BQ9HBA9 442 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 STOML2Q9UJZ1 356 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 IRAK3Q9Y616 596 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 NLRC5Q86WI3 1866 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 TCRBV16S1A1N1A0A5B0 115 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 KHDRBS3O75525 346 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 C1orf105O95561 183 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 RLN1P04808 185 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 GKN3PP0CG01 181 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 TFPIP10646 304 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 LCN1P31025 176 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 HMGA2P52926 109 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 E2F1Q01094 437 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 EEF1A2Q05639 463 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 AANATQ16613 207 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 CCNJQ5T5M9 372 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 METTL2BQ6P1Q9 378 aaKnown RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 DGLUCYQ7Z3D6 616 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 OR4N5Q8IXE1 308 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 FAM26EQ8N5C1 309 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 MEIOBQ8N635 442 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 SIRT6Q8N6T7 355 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms