RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 ALKBH4Q9NXW9 302 aa9.68□□□□□ -0.86
SHMT2-215ENST00000554656 CNIH4Q9P003 139 aa9.68□□□□□ -0.86
SHMT2-215ENST00000554656 EIF3LQ9Y262 564 aaKnown RBP9.68□□□□□ -0.86
SHMT2-215ENST00000554656 PTGDR2Q9Y5Y4 395 aa9.68□□□□□ -0.86
SHMT2-215ENST00000554656 MED12LQ86YW9 2145 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 FAM221AA4D161 298 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 OR6C76A6NM76 312 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 ANKRD65E5RJM6 399 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 H0YHG0 523 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 GSC2O15499 205 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 KRT16P08779 473 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 GABRA1P14867 456 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 PTX3P26022 381 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 GDF1P27539 372 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 TLX1P31314 330 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 CEACAM8P31997 349 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 GALNSP34059 522 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 SOX18P35713 384 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 CPOXP36551 454 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 BUD31P41223 144 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 ARFIP1P53367 373 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 MXRA7P84157 204 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 DUSP8Q13202 625 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 BIKQ13323 160 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 CUL3Q13618 768 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 AGKQ53H12 422 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 DCST1Q5T197 706 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 SCIMPQ6UWF3 145 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 C16orf89Q6UX73 402 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 RINLQ6ZS11 566 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 MMP21Q8N119 569 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 ZNF615Q8N8J6 731 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 RBM15BQ8NDT2 890 aaKnown RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 TNIP2Q8NFZ5 429 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 RIT1Q92963 219 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 ADIPOR1Q96A54 375 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 ZNF597Q96LX8 424 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 GPATCH1Q9BRR8 931 aaKnown RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 PELOQ9BRX2 385 aaKnown RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 DOHHQ9BU89 302 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 ACPTQ9BZG2 426 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 CXXC4Q9H2H0 198 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 UBQLN3Q9H347 655 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 QPCTLQ9NXS2 382 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 DNAJB12Q9NXW2 375 aaKnown RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 CRIM1Q9NZV1 1036 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 VPS29Q9UBQ0 182 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 PRPF19Q9UMS4 504 aaKnown RBP9.67□□□□□ -0.86
SHMT2-215ENST00000554656 DTX4Q9Y2E6 619 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 NDUFAF1Q9Y375 327 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 PCDHGB3Q9Y5G1 929 aa9.67□□□□□ -0.86
SHMT2-215ENST00000554656 NIPBLQ6KC79 2804 aaeCLIP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 FAM234BA2RU67 622 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 ANKRD33BA6NCL7 494 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 DYRK3O43781 588 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 SEC22BO75396 215 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 NPPAP01160 153 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 SLC35E2P0CK97 266 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 S1PR1P21453 382 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 CDK9P50750 372 aaKnown RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 CLNS1AP54105 237 aaKnown RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 DIO3P55073 304 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 RPL38P63173 70 aaKnown RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 FUT7Q11130 342 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 TBL3Q12788 808 aaKnown RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 RCAN2Q14206 197 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 KIAA0040Q15053 153 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 SPIN4Q56A73 249 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 IL23RQ5VWK5 629 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 DESI1Q6ICB0 168 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 OR52E8Q6IFG1 317 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 BLOC1S3Q6QNY0 202 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 CYP20A1Q6UW02 462 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 FUNDC1Q8IVP5 155 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 DND1Q8IYX4 353 aaKnown RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 PRR22Q8IZ63 422 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 POU5F2Q8N7G0 328 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 PCYOX1LQ8NBM8 494 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 SIMC1Q8NDZ2 872 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 C7orf57Q8NEG2 295 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 SPPL2AQ8TCT8 520 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 DIO2Q92813 273 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 MCUR1Q96AQ8 359 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 ROPN1LQ96C74 230 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 MARK4Q96L34 752 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 SERPINI1Q99574 410 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 TIMP4Q99727 224 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 CENPKQ9BS16 269 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 TMUB1Q9BVT8 246 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 CADM1Q9BY67 442 aaKnown RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 MRPL1Q9BYD6 325 aaKnown RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 RASSF4Q9H2L5 321 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 FARSBQ9NSD9 589 aaKnown RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 CCM2LQ9NUG4 571 aaPredicted RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 B4GALT7Q9UBV7 327 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 SLC6A5Q9Y345 797 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 POLR3HQ9Y535 204 aaPredicted RBP9.66□□□□□ -0.86
SHMT2-215ENST00000554656 NAV3Q8IVL0 2385 aa9.66□□□□□ -0.86
SHMT2-215ENST00000554656 C15orf38-AP3S2A0A0A6YYH1 394 aa9.65□□□□□ -0.86
SHMT2-215ENST00000554656 LOC100653049A0A140TA62 436 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms