RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 NDUFA9Q16795 377 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 MICAQ29983 383 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 TMEM44Q2T9K0 475 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 HLA-BQ31612 363 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 IQCCQ4KMZ1 466 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 CARD16Q5EG05 197 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ARMC4Q5T2S8 1044 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 TMEM236Q5W0B7 351 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 FRG2Q64ET8 278 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 NOXRED1Q6NXP6 359 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 SCIMPQ6UWF3 145 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 SUSD1Q6UWL2 747 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 KIAA1324Q6UXG2 1013 aaKnown RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 HSDL2Q6YN16 418 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ZNF517Q6ZMY9 492 aaPredicted RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 IKBIPQ70UQ0 350 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 HDDC2Q7Z4H3 204 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 SERPINA9Q86WD7 417 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 LIX1LQ8IVB5 337 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 RAVER1Q8IY67 606 aaKnown RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 DCAF4L2Q8NA75 395 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 HJURPQ8NCD3 748 aaPredicted RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 FAM46DQ8NEK8 389 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 IL17RDQ8NFM7 739 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 CADM4Q8NFZ8 388 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 OR10G2Q8NGC3 310 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 OR6F1Q8NGZ6 308 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 GOT1L1Q8NHS2 421 aaPredicted RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 NR4A3Q92570 626 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 NXPE2Q96DL1 559 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 MRGPRX1Q96LB2 322 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 TEFMQ96QE5 360 aaKnown RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 FRG2BQ96QU4 278 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 MED18Q9BUE0 208 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 MND1Q9BWT6 205 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 KRTAP9-3Q9BYQ3 159 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 PRRG3Q9BZD7 231 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ACPTQ9BZG2 426 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 NDEL1Q9GZM8 345 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ENKD1Q9H0I2 346 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 QRSL1Q9H0R6 528 aaKnown RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 IKZF5Q9H5V7 419 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 TMEM38AQ9H6F2 299 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 SARS2Q9NP81 518 aaKnown RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ISYNA1Q9NPH2 558 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ARL15Q9NXU5 204 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 WSB2Q9NYS7 404 aaPredicted RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 GPRC5BQ9NZH0 403 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 PTTG3PQ9NZH4 202 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 KLHL21Q9UJP4 597 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 SNX7Q9UNH6 387 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ABCG2Q9UNQ0 655 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 USP22Q9UPT9 525 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ANGPT4Q9Y264 503 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 CAB39Q9Y376 341 aaPredicted RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 RPL36Q9Y3U8 105 aaKnown RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ASB4Q9Y574 426 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 PCDHGA6Q9Y5G7 932 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 MAGED1Q9Y5V3 778 aaPredicted RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 U3KQV3 271 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 PI4KAP42356 2102 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 GCN1Q92616 2671 aaKnown RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 FLNBO75369 2602 aaKnown RBP5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ACACAQ13085 2346 aa5.57□□□□□ -1.52
VPS33B-203ENST00000554264 ITPR1Q14643 2758 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 LOC400499M0QZD8 3231 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 APC2O95996 2303 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 CCDC182A6NF36 153 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 H0YIV9 168 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 J3QKU1 62 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 NPC1O15118 1278 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 SCAMP2O15127 329 aaKnown RBP5.56□□□□□ -1.52
VPS33B-203ENST00000554264 OR1I1O60431 355 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 HCN1O60741 890 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 MITFO75030 526 aaPredicted RBP5.56□□□□□ -1.52
VPS33B-203ENST00000554264 TMCC2O75069 709 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 STC2O76061 302 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 CCNB2O95067 398 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 SLC25A14O95258 325 aaPredicted RBP5.56□□□□□ -1.52
VPS33B-203ENST00000554264 IGSF6O95976 241 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 ADAP00813 363 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 PDYNP01213 254 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 IL1AP01583 271 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 TRBC1P01850 177 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 LCKP06239 509 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 ADORA3P0DMS8 318 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 DBTP11182 482 aaKnown RBP5.56□□□□□ -1.52
VPS33B-203ENST00000554264 COX7A2P14406 83 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 GABRB1P18505 474 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 RHCEP18577 417 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 M6PRP20645 277 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 PRKACGP22612 351 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 GADD45AP24522 165 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 HLA-DMAP28067 261 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 SERPINA4P29622 427 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 CSTF2P33240 577 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS33B-203ENST00000554264 HNF1BP35680 557 aa5.56□□□□□ -1.52
VPS33B-203ENST00000554264 NUDT1P36639 197 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms