RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FUT5Q11128 374 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SFSWAPQ12872 951 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ARHGAP19Q14CB8 494 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 HYAL4Q2M3T9 481 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 LRIT3Q3SXY7 679 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ENTPD8Q5MY95 495 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SLC48A1Q6P1K1 146 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 CHRDL2Q6WN34 429 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 DCDC5Q6ZRR9 648 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SLC30A8Q8IWU4 369 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 PFN4Q8NHR9 129 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 FAM174AQ8TBP5 190 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ELSPBP1Q96BH3 223 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 WDR34Q96EX3 536 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 COX4I2Q96KJ9 171 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 FOXN4Q96NZ1 517 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 GAL3ST4Q96RP7 486 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 LMF1Q96S06 567 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF559Q9BR84 538 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SAP130Q9H0E3 1048 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ENKD1Q9H0I2 346 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 LMAN1LQ9HAT1 526 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 WASH6PQ9NQA3 447 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 DZANK1Q9NVP4 752 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF232Q9UNY5 417 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 EFCAB10A6NFE3 127 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 CD8B2A6NJW9 211 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 DVL2O14641 736 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 KDM1AO60341 852 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 GUCY1B2O75343 617 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 GPX5O75715 221 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 DNAJB5O75953 348 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SEMA3DO95025 777 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 TNFP01375 233 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SEMG1P04279 462 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 RPLP0P05388 317 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 CLUP10909 449 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 CD8BP10966 210 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 JUNBP17275 347 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 MAOAP21397 527 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 LTBRP36941 435 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 HSD17B2P37059 387 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 RGS6P49758 472 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 GFERP55789 205 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 RAB25P57735 213 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 PCDH1Q08174 1060 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ADAM15Q13444 863 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF846Q147U1 533 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SMAD2Q15796 467 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ODF4Q2M2E3 257 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 FAM214AQ32MH5 1076 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF404Q494X3 552 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 MTFR2Q6P444 385 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 PLBD1Q6P4A8 553 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 CPOQ8IVL8 374 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 LRRC25Q8N386 305 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 GOT1L1Q8NHS2 421 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 MTERF3Q96E29 417 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 DTNBP1Q96EV8 351 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 MMABQ96EY8 250 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 TRMT61AQ96FX7 289 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 RBM18Q96H35 190 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SPACA7Q96KW9 195 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SLC38A3Q99624 504 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 TUBA1CQ9BQE3 449 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 TIMM29Q9BSF4 260 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 ASPNQ9BXN1 380 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SLC38A1Q9H2H9 487 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 CCNB1IP1Q9NPC3 277 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 FSCN3Q9NQT6 498 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 PNO1Q9NRX1 252 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 FBXL4Q9UKA2 621 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 FBXL21Q9UKT6 434 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 MRPS7Q9Y2R9 242 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 C2orf16Q68DN1 1984 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 KIAA1671Q9BY89 1806 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 MUC3AQ02505 3323 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TRIM64CA6NLI5 447 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZIC2O95409 532 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 DRD2P14416 443 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 CSTF2P33240 577 aaKnown RBP eCLIP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 CENPAP49450 140 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 GABARAPL2P60520 117 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 IL18R1Q13478 541 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SUZ12Q15022 739 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SPHARQ15513 63 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PUS10Q3MIT2 529 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZMAT1Q5H9K5 638 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZC3H12BQ5HYM0 836 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SYT6Q5T7P8 510 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 IKBIPQ70UQ0 350 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 CAMKMTQ7Z624 323 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SYT9Q86SS6 491 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TMEM151BQ8IW70 566 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PEX5LQ8IYB4 626 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ARL14Q8N4G2 192 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ATP6V1C2Q8NEY4 427 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TSTD1Q8NFU3 115 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR10H4Q8NGA5 316 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR8D4Q8NGM9 314 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms