RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 CYTH4Q9UIA0 394 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 DNPEPQ9ULA0 475 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 SPATA2Q9UM82 520 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 TNNQ9UQP3 1299 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 ENTPD4Q9Y227 616 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 ATP8B3O60423 1300 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 TOP2BQ02880 1626 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 TCHHQ07283 1943 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 KIAA0232Q92628 1395 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 UHRF1BP1Q6BDS2 1440 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 RIMS2Q9UQ26 1411 aa2.85□□□□□ -1.95
USP28-210ENST00000542033 CCDC141Q6ZP82 1450 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 ABCC2Q92887 1545 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 DISP1Q96F81 1524 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 KDM5DQ9BY66 1539 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 LAMC1P11047 1609 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 BIVM-ERCC5R4GMW8 1640 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 MEIOCA2RUB1 952 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 GMNCA6NCL1 334 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 ANKDD1BA6NHY2 528 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 ZNF233A6NK53 670 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CCT8L1PA6NM43 557 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 EVPLLA8MZ36 301 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 C2orf74A8MZ97 194 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 H7C0C1 242 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 K7ERQ8 282 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 TLR4O00206 839 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 WRBO00258 174 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 AIM2O14862 343 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CLOCKO15516 846 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 DENRO43583 198 aaKnown RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 SMPD2O60906 423 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CDH16O75309 829 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CBR3O75828 277 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CDK14O94921 469 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 LYPLA2O95372 231 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 DEXIO95424 95 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CXCL14O95715 111 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 SNAP29O95721 258 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 TGFAP01135 160 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CXCL10P02778 98 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 RAF1P04049 648 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 GLAP06280 429 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 PGK2P07205 417 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 GP1BBP13224 206 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 NQO1P15559 274 aaKnown RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 GNSP15586 552 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 ZNF26P17031 533 aaPredicted RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 RRM2P31350 389 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CASP14P31944 242 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 SFTPDP35247 375 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 TALDO1P37837 337 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 SPAM1P38567 509 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 VHLP40337 213 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 OR3A3P47888 321 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 VEGFCP49767 419 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 PEX3P56589 373 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 NLRP11P59045 1033 aaKnown RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 YWHAEP62258 255 aaKnown RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 IRX4P78413 519 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 SLC3A1Q07837 685 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 FADDQ13158 208 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 EFTUD2Q15029 972 aaKnown RBP eCLIP2.84□□□□□ -1.952e-6■■■■■ 27.7
USP28-210ENST00000542033 TGFBIQ15582 683 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 KCNJ8Q15842 424 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 MAPK6Q16659 721 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 DNAL1Q4LDG9 190 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 PDLIM3Q53GG5 364 aaPredicted RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 FASTKD1Q53R41 847 aaKnown RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 ARMCX4Q5H9R4 360 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 SLC35D3Q5M8T2 416 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 LCN1P1Q5VSP4 162 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 C1orf146Q5VVC0 180 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 SULT1C3Q6IMI6 304 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 C3orf33Q6P1S2 294 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 TTC27Q6P3X3 843 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 BLOC1S2Q6QNY1 142 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CLEC2AQ6UVW9 174 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 DLEU7Q6UYE1 221 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 IL17RELQ6ZVW7 336 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 C1orf186Q6ZWK4 172 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 NOTCH2NLQ7Z3S9 236 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 LHFPL3Q86UP9 236 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CCDC60Q8IWA6 550 aaPredicted RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 LAX1Q8IWV1 398 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 TCAIMQ8N3R3 496 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 ANKFN1Q8N957 763 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 SIDT2Q8NBJ9 832 aaKnown RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 ICA1LQ8NDH6 482 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 GMCL1P1Q8NEA9 526 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 TMEM185AQ8NFB2 350 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 CHPT1Q8WUD6 406 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 GGHQ92820 318 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 BORCS5Q969J3 196 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 ULK4Q96C45 1275 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 MRPL38Q96DV4 380 aaKnown RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 PDXPQ96GD0 296 aa2.84□□□□□ -1.95
USP28-210ENST00000542033 ZBED3Q96IU2 234 aaPredicted RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 SPAG8Q99932 426 aaPredicted RBP2.84□□□□□ -1.95
USP28-210ENST00000542033 SLC39A8Q9C0K1 460 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms