RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	MFSD2B	A6NFX1	497 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	ZFP92	A6NM28	416 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	KIF2A	O00139	706 aa	Predicted RBP	4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	PDLIM1	O00151	329 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	SLC17A2	O00624	439 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	APBB3	O95704	486 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	BAG2	O95816	211 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	RPS2	P15880	293 aa	Known RBP	4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	ATP6V1E1	P36543	226 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	CD86	P42081	329 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	ALDH3B2	P48448	385 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	STX17	P56962	302 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	POLR2F	P61218	127 aa	Known RBP	4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	GABPB1	Q06547	395 aa	Predicted RBP	4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	LRRC74A	Q0VAA2	488 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	CCDC173	Q0VFZ6	552 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	TEF	Q10587	303 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	SERTAD2	Q14140	314 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	MORF4L2	Q15014	288 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	ERICH1	Q86X53	443 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	OR52J3	Q8NH60	311 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	RFESD	Q8TAC1	157 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	FNDC8	Q8TC99	324 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	MGARP	Q8TDB4	240 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	FAM122A	Q96E09	287 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	TRPV6	Q9H1D0	765 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	KLRF1	Q9NZS2	232 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	LAMP5	Q9UJQ1	280 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	ENTPD4	Q9Y227	616 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	TNR	Q92752	1358 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	AQR	O60306	1485 aa	Known RBP eCLIP	4.11	□□□□□ -1.75	1e-6	■■■■□ 26.1
YBX3-210	ENST00000540975	ARAP1	Q96P48	1450 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	RAI1	Q7Z5J4	1906 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	IGLV8-61	A0A075B6I0	122 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975		A0A0J9YVX5	310 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	ARPC1B	O15143	372 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	RTN2	O75298	545 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	ATP6V1G1	O75348	118 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	STAM2	O75886	525 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	STAMBP	O95630	424 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	PAH	P00439	452 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	TMOD1	P28289	359 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	CASP3	P42574	277 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	P2RY4	P51582	365 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	METAP1	P53582	386 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	RAG2	P55895	527 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	NUCB2	P80303	420 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	C17orf67	Q0P5P2	114 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	SYCP1	Q15431	976 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	TTC19	Q6DKK2	380 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	SASS6	Q6UVJ0	657 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	RUFY3	Q7L099	469 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	ZNF677	Q86XU0	584 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	MSANTD4	Q8NCY6	345 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	ST7L	Q8TDW4	575 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	ZNF606	Q8WXB4	792 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	LHX4	Q969G2	390 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	C8orf76	Q96K31	380 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	KIR2DL4	Q99706	377 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	CRACR2A	Q9BSW2	395 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	HCAR1	Q9BXC0	346 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	ELOVL4	Q9GZR5	314 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	TMEM245	Q9H330	911 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	ALG9	Q9H6U8	611 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	TMEM165	Q9HC07	324 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	AKAP7	Q9P0M2	348 aa	Predicted RBP	4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	TMEM9	Q9P0T7	183 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	CCPG1	Q9ULG6	757 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	CA5B	Q9Y2D0	317 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	KTN1	Q86UP2	1357 aa	Known RBP	4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	NCOA3	Q9Y6Q9	1424 aa		4.11	□□□□□ -1.75
YBX3-210	ENST00000540975	SYNJ2BP-COX16	A0A087WUM0	186 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	C11orf98	E9PRG8	122 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975		H0YC42	278 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	GSTA1	P08263	222 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	GHR	P10912	638 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	NPY2R	P49146	381 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	NT5C2	P49902	561 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	CCZ1B	P86790	482 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	CCZ1	P86791	482 aa	Predicted RBP	4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	OVGP1	Q12889	678 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	ZNF674	Q2M3X9	581 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	HERC4	Q5GLZ8	1057 aa	Predicted RBP	4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	PRR5L	Q6MZQ0	368 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	LINC00469	Q8N7U9	141 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	ERMN	Q8TAM6	284 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	ACMSD	Q8TDX5	336 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	TMEM37	Q8WXS4	190 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	RBM14	Q96PK6	669 aa	Known RBP	4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	SH3GL3	Q99963	347 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	NLN	Q9BYT8	704 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	OPN3	Q9H1Y3	402 aa	Predicted RBP	4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	KCNMB3	Q9NPA1	279 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	MIEF1	Q9NQG6	463 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	ARGLU1	Q9NWB6	273 aa	Predicted RBP	4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	APOBEC3B	Q9UH17	382 aa	Known RBP	4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	TRAF3IP3	Q9Y228	551 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	ZNF175	Q9Y473	711 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	RAB3GAP2	Q9H2M9	1393 aa		4.1	□□□□□ -1.75
YBX3-210	ENST00000540975	NPC1L1	Q9UHC9	1359 aa		4.1	□□□□□ -1.75

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