RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 KIRREL3Q8IZU9 778 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 FAM83FQ8NEG4 500 aaPredicted RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 FAM110BQ8TC76 370 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 FAM120BQ96EK7 910 aaKnown RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 MS4A4EQ96PG1 132 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 TIMP4Q99727 224 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 RTN4RQ9BZR6 473 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 MEAF6Q9HAF1 191 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 Q9N2J8 555 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 NOP53Q9NZM5 478 aaKnown RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 FLRT3Q9NZU0 649 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 ACAD8Q9UKU7 415 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 ABCG2Q9UNQ0 655 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 RNF6Q9Y252 685 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 MRPS18CQ9Y3D5 142 aaKnown RBP12.93□□□□□ -0.34
USP28-209ENST00000540925 OR10H1Q9Y4A9 318 aa12.93□□□□□ -0.34
USP28-209ENST00000540925 CSMD2Q7Z408 3487 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 GXYLT2A0PJZ3 443 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 C17orf51A8MQB3 221 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 C19orf84I3L1E1 186 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 EMC8O43402 210 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 CBR3O75828 277 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 ACP2P11117 423 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 DDX5P17844 614 aaKnown RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 EFNA1P20827 205 aaPredicted RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 EVI2BP34910 448 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 DIO3P55073 304 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 CLDN8P56748 225 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 MRPS22P82650 360 aaKnown RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 TFF3Q07654 80 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 PMPCAQ10713 525 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 MAD2L1Q13257 205 aaPredicted RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 CASP8Q14790 479 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 ZNHIT3Q15649 155 aaPredicted RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 DECR1Q16698 335 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 DCST1Q5T197 706 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 CPTPQ5TA50 214 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 HHATQ5VTY9 493 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 ZNF585AQ6P3V2 769 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 ZCCHC12Q6PEW1 402 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 B3GNT6Q6ZMB0 384 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 SEM1Q6ZVN7 128 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 ACAD11Q709F0 780 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 NATD1Q8N6N6 113 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 ANKRD42Q8N9B4 389 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 FADS6Q8N9I5 356 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 CDRT4Q8N9R6 151 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 NUP43Q8NFH3 380 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 LILRB4Q8NHJ6 448 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 CEP70Q8NHQ1 597 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 RND1Q92730 232 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 SDCCAG3Q96C92 435 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 TREX2Q9BQ50 279 aaPredicted RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 UGT2B28Q9BY64 529 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 BHLHE41Q9C0J9 482 aaPredicted RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 CHST11Q9NPF2 352 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 SERHLQ9NQF3 203 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 PNPOQ9NVS9 261 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 FAM120CQ9NX05 1096 aaKnown RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 FBXL2Q9UKC9 423 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 MAPRE3Q9UPY8 281 aa12.92□□□□□ -0.34
USP28-209ENST00000540925 EIF3LQ9Y262 564 aaKnown RBP12.92□□□□□ -0.34
USP28-209ENST00000540925 AKAP9Q99996 3911 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 A0A1W2PRB8 838 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 SCN2BO60939 215 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 TRAPPC6AO75865 159 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 GABRA1P14867 456 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 BMP7P18075 431 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 CHRNB4P30926 498 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 GABRA3P34903 492 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 GPC1P35052 558 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 PTGER4P35408 488 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 KRT20P35900 424 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 ADH7P40394 386 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 GFRA1P56159 465 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 WNT3P56703 355 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 OCRLQ01968 901 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 DUSP5Q16690 384 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP28-209ENST00000540925 WIPI1Q5MNZ9 446 aaPredicted RBP12.91□□□□□ -0.34
USP28-209ENST00000540925 C1orf185Q5T7R7 199 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 OGFOD2Q6N063 350 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 APOOLQ6UXV4 268 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 SLC16A11Q8NCK7 471 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 RAB3IL1Q8TBN0 382 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 OR5P2Q8WZ92 322 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 PIK3R3Q92569 461 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 C16orf58Q96GQ5 468 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 WDYHV1Q96HA8 205 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 NUF2Q9BZD4 464 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 EXO5Q9H790 373 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 CXorf36Q9H7Y0 433 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 C3orf14Q9HBI5 128 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 EQTNQ9NQ60 294 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 ATAD3AQ9NVI7 634 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 THAP1Q9NVV9 213 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 GPATCH2Q9NW75 528 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 GIN1Q9NXP7 522 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 SLC6A5Q9Y345 797 aa12.91□□□□□ -0.34
USP28-209ENST00000540925 MED12Q93074 2177 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms