RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TBXA2RP21731 343 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 UQCRC2P22695 453 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GNLYP22749 145 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 AADACP22760 399 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CA6P23280 308 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 IL32P24001 234 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MMP11P24347 488 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FPR3P25089 353 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LAP3P28838 519 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD1CP29017 333 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PCSK6P29122 969 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GNA11P29992 359 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRDX3P30048 256 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HMOX2P30519 316 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ALDH1B1P30837 517 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAT2AP31153 395 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SRD5A2P31213 254 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HOXA6P31267 233 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HOXA7P31268 230 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FOXN2P32314 431 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCTDP32321 178 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 IFNA8P32881 189 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TNFSF8P32971 234 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 UGT1A5P35504 534 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PCK1P35558 622 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYLC1P35663 651 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 AHRP35869 848 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FDFT1P37268 417 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL13AP40429 203 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 EIF2S3P41091 472 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ETV5P41161 510 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MNDAP41218 407 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NAA10P41227 235 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPS5P46782 204 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HAAOP46952 286 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 UQCRFS1P47985 274 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 AMTP48728 403 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NPY2RP49146 381 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CX3CR1P49238 355 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSNK1EP49674 416 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TPMTP51580 245 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARHGDIAP52565 204 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARHGDIBP52566 201 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 EFNB2P52799 333 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NDST1P52848 882 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PDX1P52945 283 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACLYP53396 1101 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LIMK2P53671 638 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MLLT10P55197 1068 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HNRNPH2P55795 449 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLDN20P56880 219 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 STX17P56962 302 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAS2R38P59533 333 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD81P60033 236 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLP1P60201 277 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SEC61BP60468 96 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRPS1P60891 318 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAGOHP61326 146 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HERV-K104P61576 105 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSPAN5P62079 268 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSMC5P62195 406 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPS18P62269 152 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TNNC1P63316 161 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GSTO1P78417 241 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPS6P82932 125 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 XIAPP98170 497 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDK16Q00536 496 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NAAAQ02083 359 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 BDH1Q02338 343 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAX5Q02548 391 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLOD1Q02809 727 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SRYQ05066 204 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRC63Q05C16 580 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAD51Q06609 339 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ENPEPQ07075 957 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZFP36L1Q07352 338 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MFGE8Q08431 387 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PNRC1Q12796 327 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASPHQ12797 758 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDH17Q12864 832 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FADDQ13158 208 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLAQ13239 276 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 STX3Q13277 289 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ORC2Q13416 577 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNTA1Q13424 505 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NFATC2Q13469 925 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR50Q13585 617 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PEX6Q13608 980 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDH18Q13634 790 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ITGA9Q13797 1035 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 EXOSC2Q13868 293 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CEACAM7Q14002 265 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYLC2Q14093 348 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RCAN2Q14206 197 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GNA13Q14344 377 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GK3PQ14409 553 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR176Q14439 515 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DMC1Q14565 340 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OPCMLQ14982 345 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HEPACAMQ14CZ8 416 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms