RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 COMMD6Q7Z4G1 85 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ENTHD1Q8IYW4 607 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 LMNTD1Q8N9Z9 388 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 PROKR2Q8NFJ6 384 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ST8SIA2Q92186 375 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 MAL2Q969L2 176 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 HDHD5Q9BXW7 423 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.43□□□□□ -0.42
TCOF1-213ENST00000514442 TRIM36Q9NQ86 728 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 MARK1Q9P0L2 795 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 PCDHGB7Q9Y5F8 929 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 HMGN1P05114 100 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF3P17036 446 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ITGB7P26010 798 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CCR7P32248 378 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 GABRA3P34903 492 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CDH11P55287 796 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 MICAQ29983 383 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 CSNK1A1LQ8N752 337 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 HHIPL1Q96JK4 782 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF583Q96ND8 569 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 TTTY10Q9BZA0 68 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 GPRC5BQ9NZH0 403 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 KLF15Q9UIH9 416 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 PCDHGA2Q9Y5H1 932 aa12.43□□□□□ -0.42
TCOF1-213ENST00000514442 LOC105369274A0A096LPK9 316 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 BLOC1S5-TXNDC5H3BN57 136 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 HPGDSO60760 199 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 ETFAP13804 333 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 RBM34P42696 430 aaKnown RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 RAB28P51157 221 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 SIM1P81133 766 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 METAP1DQ6UB28 335 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 BAIAP2L2Q6UXY1 529 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 DPPA4Q7L190 304 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF551Q7Z340 670 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 OR4N4Q8N0Y3 316 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 LINC00471Q8N535 108 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 INPP5KQ9BT40 448 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 THAP7Q9BT49 309 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 KCNK12Q9HB15 430 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 HEBP1Q9NRV9 189 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 ACOXLQ9NUZ1 547 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 GDE1Q9NZC3 331 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 LDOC1O95751 146 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 PUM1Q14671 1186 aaKnown RBP eCLIP12.42□□□□□ -0.426e-8■■■■□ 21.6
TCOF1-213ENST00000514442 FCN2Q15485 313 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 FAM78AQ5JUQ0 283 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 OR4C11Q6IEV9 310 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 RFLNAQ6ZTI6 216 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 C6orf120Q7Z4R8 191 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 PEG10Q86TG7 708 aaKnown RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 LNX2Q8N448 690 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 THAP3Q8WTV1 239 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 PLEKHA1Q9HB21 404 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 ARNT2Q9HBZ2 717 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 WASH6PQ9NQA3 447 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 KIAA0100Q14667 2235 aaKnown RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 RPP14O95059 124 aaKnown RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 APOC1P02654 83 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 PDHA2P29803 388 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 BMP8BP34820 402 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 PGFP49763 221 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 SUOXP51687 545 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 MC1RQ01726 317 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 AANATQ16613 207 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 SLC22A10Q63ZE4 541 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 UNC5DQ6UXZ4 953 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 BMP8AQ7Z5Y6 402 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 RIMKLAQ8IXN7 391 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 C15orf40Q8WUR7 153 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF471Q9BX82 626 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 C8orf33Q9H7E9 229 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 BCORQ6W2J9 1755 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 B4DXG7 233 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 CREBL2O60519 120 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 NAT2P11245 290 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 RSPO2Q6UXX9 243 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 ZNF784Q8NCA9 323 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-213ENST00000514442 CHST4Q8NCG5 386 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 C1orf216Q8TAB5 229 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 CHFRQ96EP1 664 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 MACROD1Q9BQ69 325 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 ACTL8Q9H568 366 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 ABCA3Q99758 1704 aa12.42□□□□□ -0.42
TCOF1-213ENST00000514442 KLK3P07288 261 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-213ENST00000514442 PITPNBP48739 271 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 PSPHP78330 225 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 KCNC4Q03721 635 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 FAM76BQ5HYJ3 339 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 WASH2PQ6VEQ5 465 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 KLHDC8AQ8IYD2 350 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 OR5J2Q8NH18 312 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 C16orf78Q8WTQ4 265 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 TTC9Q92623 222 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 NKD1Q969G9 470 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 NT5C3BQ969T7 300 aa12.41□□□□□ -0.42
TCOF1-213ENST00000514442 ISG20Q96AZ6 181 aaKnown RBP12.41□□□□□ -0.42
TCOF1-213ENST00000514442 SORBS1Q9BX66 1292 aaKnown RBP12.41□□□□□ -0.42
TCOF1-213ENST00000514442 TRIM2Q9C040 744 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms