RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 MED11Q9P086 117 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 ZNF175Q9Y473 711 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 OR2M5A3KFT3 312 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 FAM187AA6NFU0 413 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 RNF212BA8MTL3 300 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 RNF223E7ERA6 249 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 PPP6CO00743 305 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 HS3ST1O14792 307 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 RAD51CO43502 376 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 MAGEA4P43358 317 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 EEFSECP57772 596 aaKnown RBP13.2□□□□□ -0.3
TRAF4-212ENST00000498540 DMTNQ08495 405 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 STX5Q13190 355 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 FGFBP1Q14512 234 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 LETMD1Q6P1Q0 360 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 SH2D5Q6ZV89 423 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 FAM214BQ7L5A3 538 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 MILR1Q7Z6M3 343 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 SLC44A2Q8IWA5 706 aaPredicted RBP13.2□□□□□ -0.3
TRAF4-212ENST00000498540 PHC2Q8IXK0 858 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 PLPPR2Q96GM1 343 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 FAIM2Q9BWQ8 316 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 RTN4RQ9BZR6 473 aa13.2□□□□□ -0.3
TRAF4-212ENST00000498540 ABCA1O95477 2261 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 STX16-NPEPL1H3BU86 382 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 STX16O14662 325 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 BCAS2O75934 225 aaPredicted RBP13.19□□□□□ -0.3
TRAF4-212ENST00000498540 TYK2P29597 1187 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 PLTPP55058 493 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 GNG11P61952 73 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 VEZF1Q14119 521 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 GANABQ14697 944 aaKnown RBP13.19□□□□□ -0.3
TRAF4-212ENST00000498540 ERCC6LQ2NKX8 1250 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 HEPHL1Q6MZM0 1159 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 HMBOX1Q6NT76 420 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 STAC2Q6ZMT1 411 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 METTL25Q8N6Q8 603 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 ZNF611Q8N823 705 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 OR7G2Q8NG99 324 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 FBXO25Q8TCJ0 367 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 SELENOMQ8WWX9 145 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 EXOSC8Q96B26 276 aaKnown RBP13.19□□□□□ -0.3
TRAF4-212ENST00000498540 ERP27Q96DN0 273 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 NAPGQ99747 312 aaPredicted RBP13.19□□□□□ -0.3
TRAF4-212ENST00000498540 TMEM204Q9BSN7 226 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 VPS11Q9H270 941 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 KCNF1Q9H3M0 494 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 BRF2Q9HAW0 419 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 CLEC4AQ9UMR7 237 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 OR10H1Q9Y4A9 318 aa13.19□□□□□ -0.3
TRAF4-212ENST00000498540 SHISA8B8ZZ34 492 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 FADS1O60427 444 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 TMCC2O75069 709 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 ESRRBO95718 433 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 IL3P08700 152 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 RPS17P08708 135 aaKnown RBP13.18□□□□□ -0.3
TRAF4-212ENST00000498540 PPP3CBP16298 524 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 TSPAN8P19075 237 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 SLC6A8P48029 635 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 SERPINB8P50452 374 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 TRA2BP62995 288 aaKnown RBP13.18□□□□□ -0.3
TRAF4-212ENST00000498540 PSPHP78330 225 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 PSG6Q00889 435 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 ZNF155Q12901 538 aaPredicted RBP13.18□□□□□ -0.3
TRAF4-212ENST00000498540 TRADDQ15628 312 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 UAP1Q16222 522 aaPredicted RBP13.18□□□□□ -0.3
TRAF4-212ENST00000498540 CLEC12BQ2HXU8 276 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 TCHHL1Q5QJ38 904 aaPredicted RBP13.18□□□□□ -0.3
TRAF4-212ENST00000498540 GGNQ86UU5 652 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 WFDC8Q8IUA0 241 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 MTBPQ96DY7 904 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 C1GALT1C1Q96EU7 318 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 STMN4Q9H169 189 aaPredicted RBP13.18□□□□□ -0.3
TRAF4-212ENST00000498540 XPR1Q9UBH6 696 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 LAMP3Q9UQV4 416 aa13.18□□□□□ -0.3
TRAF4-212ENST00000498540 LINC01387J3KSC0 135 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 PLOD3O60568 738 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 FCGR2AP12318 317 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 CDH13P55290 713 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 RPS3AP61247 264 aaKnown RBP13.17□□□□□ -0.3
TRAF4-212ENST00000498540 MRPS22P82650 360 aaKnown RBP13.17□□□□□ -0.3
TRAF4-212ENST00000498540 GUCY2DQ02846 1103 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 SGCBQ16585 318 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 SH2D4BQ5SQS7 431 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 PPP4R4Q6NUP7 873 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 ZDHHC24Q6UX98 284 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 OR6K3Q8NGY3 331 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 UHMK1Q8TAS1 419 aaKnown RBP13.17□□□□□ -0.3
TRAF4-212ENST00000498540 AKAP1Q92667 903 aaKnown RBP eCLIP13.17□□□□□ -0.3
TRAF4-212ENST00000498540 GFM2Q969S9 779 aaKnown RBP13.17□□□□□ -0.3
TRAF4-212ENST00000498540 ACTR6Q9GZN1 396 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 PLSCR4Q9NRQ2 329 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 MCM8Q9UJA3 840 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 ZNF225Q9UK10 706 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 SNX6Q9UNH7 406 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 ABCG2Q9UNQ0 655 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 EMC9Q9Y3B6 208 aa13.17□□□□□ -0.3
TRAF4-212ENST00000498540 UQCRHLA0A096LP55 91 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 GMFGO60234 142 aa13.16□□□□□ -0.3
TRAF4-212ENST00000498540 OTCP00480 354 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms