RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SLC38A1Q9H2H9 487 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ANKRA2Q9H9E1 313 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 GOLGA4Q13439 2230 aaKnown RBP15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 LINC00854A0A1B0GVQ3 168 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 KDM4EB2RXH2 506 aaPredicted RBP15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ERI3O43414 337 aaKnown RBP15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 PRICKLE3O43900 615 aaPredicted RBP15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 AIFM1O95831 613 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 KRT8P05787 483 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 NR2F6P10588 404 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ATP5A1P25705 553 aaKnown RBP15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 PKLRP30613 574 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 AGBL4Q5VU57 503 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 PTCRAQ6ISU1 281 aaPredicted RBP15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 HSDL2Q6YN16 418 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SHFQ7M4L6 423 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 VRK2Q86Y07 508 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CACUL1Q86Y37 369 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TTLQ8NG68 377 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TEX47Q8TBZ9 253 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 DIO2Q92813 273 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 KLK6Q92876 244 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 KCTD7Q96MP8 289 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 OR7D2Q96RA2 312 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TM9SF2Q99805 663 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MMP28Q9H239 520 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 PLEKHM1Q9Y4G2 1056 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SPEGQ15772 3267 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SMIM30A4D0T7 59 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FAM170BA6NMN3 283 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SYT5O00445 386 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SCO2O43819 266 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FHP07954 510 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 OMPP47874 163 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MTNR1AP48039 350 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FABP5Q01469 135 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TSPAN31Q12999 210 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 COL9A2Q14055 689 aaPredicted RBP15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 GNA13Q14344 377 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 PRAMEF8Q5VWM4 474 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 PRAMEF7Q5VXH5 474 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 OR2L8Q8NGY9 312 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 C1GALT1C1Q96EU7 318 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ARHGAP9Q9BRR9 750 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 OSGEPL1Q9H4B0 414 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 C12orf10Q9HB07 376 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 IMP3Q9NV31 184 aaKnown RBP15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CNIH4Q9P003 139 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 LIPT1Q9Y234 373 aa15.07■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TICRRQ7Z2Z1 1910 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MEIOCA2RUB1 952 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FAM172BPA6NC97 362 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TBC1D3BA6NDS4 549 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FABP12A6NFH5 140 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ALX3O95076 343 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 PCDH8O95206 1070 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 LALBAP00709 142 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TRHRP34981 398 aaPredicted RBP15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TRIM23P36406 574 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 DDOSTP39656 456 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ANXA11P50995 505 aaKnown RBP15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TAS2R41P59536 307 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SCN1BQ07699 218 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FGL2Q14314 439 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CRTC2Q53ET0 693 aaPredicted RBP15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ZNF628Q5EBL2 1059 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ZNF311Q5JNZ3 666 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 BHLHB9Q6PI77 547 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CD200R1LQ6Q8B3 271 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 RASSF6Q6ZTQ3 369 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 UTS2BQ765I0 119 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 RAB42Q8N4Z0 105 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 LSMEM1Q8N8F7 131 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 OR56A1Q8NGH5 318 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 GIMAP1Q8WWP7 306 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 DIRAS2Q96HU8 199 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FAM46AQ96IP4 442 aaKnown RBP15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 IRF2BPLQ9H1B7 796 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MRPS30Q9NP92 439 aaKnown RBP15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TOR4AQ9NXH8 423 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 THAP10Q9P2Z0 257 aaPredicted RBP15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 KCNK6Q9Y257 313 aa15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 EXOSC1Q9Y3B2 195 aaKnown RBP15.06■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 IRGMA1A4Y4 181 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CPSF4LA6NMK7 179 aaKnown RBP15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 POLR1CO15160 346 aaPredicted RBP15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MID1O15344 667 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 NARSO43776 548 aaKnown RBP15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ZIC2O95409 532 aaPredicted RBP15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 F3P13726 295 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CERS1P27544 350 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 PEBP1P30086 187 aaKnown RBP15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 IFNA8P32881 189 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SOX18P35713 384 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TRAM2Q15035 370 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 IRF4Q15306 451 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SLC48A1Q6P1K1 146 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ZNF730Q6ZMV8 503 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FBXL6Q8N531 539 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 GDPD1Q8N9F7 314 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms