RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 ACPTQ9BZG2 426 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 ACBD3Q9H3P7 528 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 GIMAP4Q9NUV9 329 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 MED11Q9P086 117 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 DMGDHQ9UI17 866 aaKnown RBP11.42□□□□□ -0.58
SKA1-205ENST00000494518 DEFB108AA8MXU0 73 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 SHISA8B8ZZ34 492 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 H3BML4 177 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 H7C1Q1 480 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 MSTNO14793 375 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 CTIFO43310 598 aaKnown RBP11.41□□□□□ -0.58
SKA1-205ENST00000494518 SMPD2O60906 423 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 GOSR1O95249 250 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 LY6G6DO95868 133 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 KRT6AP02538 564 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 KRT6BP04259 564 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 JUNP05412 331 aaKnown RBP11.41□□□□□ -0.58
SKA1-205ENST00000494518 COL6A2P12110 1019 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 CHMP24386 653 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 CCKARP32238 428 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 EVI2BP34910 448 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 MC3RP41968 323 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 KCNJ5P48544 419 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 KRT6CP48668 564 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 SUCLG1P53597 346 aaKnown RBP11.41□□□□□ -0.58
SKA1-205ENST00000494518 CLDN15P56746 228 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 CKAP4Q07065 602 aaKnown RBP11.41□□□□□ -0.58
SKA1-205ENST00000494518 ACSM2AQ08AH3 577 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 CSTF3Q12996 717 aaKnown RBP11.41□□□□□ -0.58
SKA1-205ENST00000494518 RASA2Q15283 850 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 ZNF678Q5SXM1 525 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 ACSM2BQ68CK6 577 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 ANKRD34AQ69YU3 496 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 PPP4R4Q6NUP7 873 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 ZNF474Q6S9Z5 364 aaPredicted RBP11.41□□□□□ -0.58
SKA1-205ENST00000494518 TMEM107Q6UX40 140 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 GPRIN3Q6ZVF9 776 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 FAM9CQ8IZT9 166 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 OR2M3Q8NG83 312 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 METTL6Q8TCB7 284 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 PERPQ96FX8 193 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 PGM2Q96G03 612 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 ZNF845Q96IR2 970 aaPredicted RBP11.41□□□□□ -0.58
SKA1-205ENST00000494518 Q96MF0 132 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 BBS4Q96RK4 519 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 C1QTNF3Q9BXJ4 246 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 PINK1Q9BXM7 581 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 FUT8Q9BYC5 575 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 RTN4RQ9BZR6 473 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 SLC35C2Q9NQQ7 365 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 TMEM216Q9P0N5 145 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 TIMM22Q9Y584 194 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 FREM1Q5H8C1 2179 aa11.41□□□□□ -0.58
SKA1-205ENST00000494518 ANK3Q12955 4377 aaKnown RBP11.4□□□□□ -0.58
SKA1-205ENST00000494518 DLX3O60479 287 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 ULK1O75385 1050 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 BCAS2O75934 225 aaPredicted RBP11.4□□□□□ -0.58
SKA1-205ENST00000494518 PEPDP12955 493 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 HSD3B1P14060 373 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 POU2F1P14859 743 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 TAC1P20366 129 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 HSD3B2P26439 372 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 TIA1P31483 386 aaKnown RBP eCLIP11.4□□□□□ -0.58
SKA1-205ENST00000494518 CD79BP40259 229 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 KIR2DL2P43627 348 aaPredicted RBP11.4□□□□□ -0.58
SKA1-205ENST00000494518 PNLIPRP2P54317 469 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 DSCR4P56555 118 aaPredicted RBP11.4□□□□□ -0.58
SKA1-205ENST00000494518 CLDN20P56880 219 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 EXOC3L2Q2M3D2 409 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 SHEQ5VZ18 495 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 MEIOBQ8N635 442 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 FADS6Q8N9I5 356 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 NOA1Q8NC60 698 aaKnown RBP11.4□□□□□ -0.58
SKA1-205ENST00000494518 FNDC9Q8TBE3 224 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 RNF138Q8WVD3 245 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 ZNF382Q96SR6 550 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 FMO2Q99518 471 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 CCL19Q99731 98 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 ZNF337Q9Y3M9 751 aa11.4□□□□□ -0.58
SKA1-205ENST00000494518 EXOC1LA0A1B0GW35 172 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 OR2M5A3KFT3 312 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 TRIM64A6NGJ6 449 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 TRIM64BA6NI03 449 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 GOLGA8RI6L899 631 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 ARHGEF9O43307 516 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 URI1O94763 535 aaPredicted RBP11.39□□□□□ -0.59
SKA1-205ENST00000494518 HEXAP06865 529 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 SNRPAP09012 282 aaKnown RBP11.39□□□□□ -0.59
SKA1-205ENST00000494518 ANXA4P09525 319 aaPredicted RBP11.39□□□□□ -0.59
SKA1-205ENST00000494518 PCSK6P29122 969 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 UGT2B10P36537 528 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 NCBP2P52298 156 aaKnown RBP eCLIP11.39□□□□□ -0.59
SKA1-205ENST00000494518 PSG6Q00889 435 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 C2orf80Q0P641 193 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 HEPACAMQ14CZ8 416 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 SPIN4Q56A73 249 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 SPDYAQ5MJ70 313 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 LGSNQ5TDP6 509 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 OR2A2Q6IF42 318 aa11.39□□□□□ -0.59
SKA1-205ENST00000494518 C22orf34Q6ZV56 151 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms