RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 CCM2LQ9NUG4 571 aaPredicted RBP11.3□□□□□ -0.6
COL6A1-205ENST00000492851 DDX18Q9NVP1 670 aaKnown RBP11.3□□□□□ -0.6
COL6A1-205ENST00000492851 OXSMQ9NWU1 459 aa11.3□□□□□ -0.6
COL6A1-205ENST00000492851 FBXL2Q9UKC9 423 aa11.3□□□□□ -0.6
COL6A1-205ENST00000492851 A0A1W2PPM1 405 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 A8MXE2 369 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 KDM4EB2RXH2 506 aaPredicted RBP11.29□□□□□ -0.6
COL6A1-205ENST00000492851 NPIPB8E9PQR5 432 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 UPK1AO00322 258 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 COPEO14579 308 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 PLIN3O60664 434 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 SEC22BO75396 215 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 KCNH1O95259 989 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 IL33O95760 270 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 CHEK2O96017 543 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 PROCP04070 461 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 FAM153BP0C7A2 387 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 SLCO1A2P46721 670 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 AGFG1P52594 562 aaKnown RBP11.29□□□□□ -0.6
COL6A1-205ENST00000492851 GAS1P54826 345 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 FOXA1P55317 472 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 CLDN18P56856 261 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 C17orf67Q0P5P2 114 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 SNTB1Q13884 538 aaKnown RBP11.29□□□□□ -0.6
COL6A1-205ENST00000492851 FAM153CQ494X1 144 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 LIPMQ5VYY2 423 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 OR5M10Q6IEU7 315 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 TMEM107Q6UX40 140 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 RNF165Q6ZSG1 346 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 SH2D5Q6ZV89 423 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 FADS6Q8N9I5 356 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 OR4N2Q8NGD1 307 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 CEP70Q8NHQ1 597 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 EFHD2Q96C19 240 aaPredicted RBP11.29□□□□□ -0.6
COL6A1-205ENST00000492851 INTS12Q96CB8 462 aaKnown RBP11.29□□□□□ -0.6
COL6A1-205ENST00000492851 ZNF764Q96H86 408 aaPredicted RBP11.29□□□□□ -0.6
COL6A1-205ENST00000492851 AMDHD1Q96NU7 426 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 ALPK1Q96QP1 1244 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 GLIPR2Q9H4G4 154 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 FAM120CQ9NX05 1096 aaKnown RBP11.29□□□□□ -0.6
COL6A1-205ENST00000492851 CLCF1Q9UBD9 225 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 PACSIN3Q9UKS6 424 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 EMCNQ9ULC0 261 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 CCDC168Q8NDH2 2452 aa11.29□□□□□ -0.6
COL6A1-205ENST00000492851 HIVEP1P15822 2718 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 MSTNO14793 375 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 HCRTR2O43614 444 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 FADS1O60427 444 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 TNFRSF21O75509 655 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 PSMG1O95456 288 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 RAF1P04049 648 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 PRPS2P11908 318 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 NEFHP12036 1026 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 GPC1P35052 558 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 MC3RP41968 323 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 STARP49675 285 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 RPS3AP61247 264 aaKnown RBP11.28□□□□□ -0.6
COL6A1-205ENST00000492851 KEAP1Q14145 624 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 SH2D4BQ5SQS7 431 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 ZCCHC12Q6PEW1 402 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 TGIF2LYQ8IUE0 185 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 ZFP28Q8NHY6 868 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 LINC01560Q8TB33 94 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 UBLCP1Q8WVY7 318 aaPredicted RBP11.28□□□□□ -0.6
COL6A1-205ENST00000492851 SMPDL3BQ92485 455 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 NRGNQ92686 78 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 TRIM44Q96DX7 344 aaPredicted RBP11.28□□□□□ -0.6
COL6A1-205ENST00000492851 PIGQQ9BRB3 760 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 SLC39A3Q9BRY0 314 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 LMF2Q9BU23 707 aaKnown RBP11.28□□□□□ -0.6
COL6A1-205ENST00000492851 TMUB1Q9BVT8 246 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 DSN1Q9H410 356 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 C1orf109Q9NX04 203 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 RPH3AQ9Y2J0 694 aaPredicted RBP11.28□□□□□ -0.6
COL6A1-205ENST00000492851 TMED5Q9Y3A6 229 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 POLR3HQ9Y535 204 aaPredicted RBP11.28□□□□□ -0.6
COL6A1-205ENST00000492851 NINQ8N4C6 2090 aa11.28□□□□□ -0.6
COL6A1-205ENST00000492851 SLC22A20A6NK97 555 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 TBX19O60806 448 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 SOX30O94993 753 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 HSPA4LO95757 839 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 FOSL1P15407 271 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 KRT4P19013 534 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 HK1P19367 917 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 LCN1P31025 176 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 PRR5P85299 388 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 FOXF2Q12947 444 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 KIAA0040Q15053 153 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 RAET1LQ5VY80 246 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 PAMR1Q6UXH9 720 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 R3HCC1LQ7Z5L2 792 aaKnown RBP11.27□□□□□ -0.61
COL6A1-205ENST00000492851 LUZP2Q86TE4 346 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 CDRT4Q8N9R6 151 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 OR2M3Q8NG83 312 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 DUSP19Q8WTR2 217 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 GFM2Q969S9 779 aaKnown RBP11.27□□□□□ -0.61
COL6A1-205ENST00000492851 MTERF3Q96E29 417 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 ZBED6CLQ96FA7 236 aaPredicted RBP11.27□□□□□ -0.61
COL6A1-205ENST00000492851 G6PC3Q9BUM1 346 aa11.27□□□□□ -0.61
COL6A1-205ENST00000492851 TBL1XR1Q9BZK7 514 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms