RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SAMD14Q8IZD0 417 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 SUMF1Q8NBK3 374 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 SIMC1Q8NDZ2 872 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 OR4C15Q8NGM1 316 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 OR7D2Q96RA2 312 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 TREX2Q9BQ50 279 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 CHRNA10Q9GZZ6 450 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 REEP1Q9H902 201 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 ACOT13Q9NPJ3 140 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 TAS2R16Q9NYV7 291 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 PCDHGA5Q9Y5G8 931 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 GPC6Q9Y625 555 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 CDX4O14627 284 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 LDB3O75112 727 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 RRM2P31350 389 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 TGFBR2P37173 567 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 LIPAP38571 399 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 XCR1P46094 333 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 CRISP3P54108 245 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 TCF15Q12870 199 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 INAVAQ3KP66 663 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF628Q5EBL2 1059 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 LSRQ86X29 649 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 ENTHD1Q8IYW4 607 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 NLGN4XQ8N0W4 816 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 IFI44Q8TCB0 444 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 ANKRD9Q96BM1 317 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 DUSP21Q9H596 190 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 ANKHQ9HCJ1 492 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 BCL2L10Q9HD36 194 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 PLCL2Q9UPR0 1127 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 LYVE1Q9Y5Y7 322 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 ADAMTS20P59510 1910 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 OTOGLQ3ZCN5 2332 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 A0A0A6YYC8 382 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-230ENST00000488543 I3L1I5 382 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-230ENST00000488543 J3KTA2 159 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 CHST10O43529 356 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 RGS10O43665 173 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 PDE9AO76083 593 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 GPR75O95800 540 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 NR2F1P10589 423 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 CKMT1AP12532 417 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 POU2F1P14859 743 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 CD36P16671 472 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 GRK5P34947 590 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 EIF2B2P49770 351 aaKnown RBP11.34□□□□□ -0.59
HDAC6-230ENST00000488543 HSD11B2P80365 405 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 KCNC4Q03721 635 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 SPEM2Q0P670 501 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 SLC13A2Q13183 592 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 WDR74Q6RFH5 385 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF605Q86T29 641 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 COMTD1Q86VU5 262 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 CADM3Q8N126 398 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 OR2L13Q8N349 312 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 METTL27Q8N6F8 245 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-230ENST00000488543 DYNC2LI1Q8TCX1 351 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 COL26A1Q96A83 441 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 COL21A1Q96P44 957 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 CD180Q99467 661 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 EQTNQ9NQ60 294 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 FAM86C1Q9NVL1 165 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 ENPP4Q9Y6X5 453 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 SPACA6W5XKT8 324 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 ASNA1O43681 348 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 DNAJB5O75953 348 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 KCNJ5P48544 419 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 ARL4DP49703 201 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 MGAT2Q10469 447 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 MFSD12Q6NUT3 480 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 FAHD1Q6P587 224 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 SETD9Q8NE22 299 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 OR4D11Q8NGI4 311 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 BBS10Q8TAM1 723 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 RHBDD1Q8TEB9 315 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 DOK4Q8TEW6 326 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF566Q969W8 418 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 PPP1R14BQ96C90 147 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 FAM210AQ96ND0 272 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 ACTRT3Q9BYD9 372 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 HMG20AQ9NP66 347 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 SCN3BQ9NY72 215 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 NDRG4Q9ULP0 352 aaKnown RBP11.34□□□□□ -0.59
HDAC6-230ENST00000488543 RNF6Q9Y252 685 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 TPRKBQ9Y3C4 175 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 PCDHGB3Q9Y5G1 929 aa11.34□□□□□ -0.59
HDAC6-230ENST00000488543 MN1Q10571 1320 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-230ENST00000488543 ZFHX2Q9C0A1 2572 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-230ENST00000488543 TMEM150CB9EJG8 249 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 ATP1B1P05026 303 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 PNLIPP16233 465 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 ACVR2AP27037 513 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 ANXA11P50995 505 aaKnown RBP11.33□□□□□ -0.6
HDAC6-230ENST00000488543 NPRL3Q12980 569 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 OXA1LQ15070 435 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 COLEC12Q5KU26 742 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 EXOSC6Q5RKV6 272 aaKnown RBP11.33□□□□□ -0.6
HDAC6-230ENST00000488543 TMEM71Q6P5X7 295 aa11.33□□□□□ -0.6
HDAC6-230ENST00000488543 WDR53Q7Z5U6 358 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms