RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TRIM46Q7Z4K8 759 aa10.41□□□□□ -0.74
HDAC6-228ENST00000486227 OR6C4Q8NGE1 309 aa10.41□□□□□ -0.74
HDAC6-228ENST00000486227 OR2AJ1Q8NGZ0 328 aa10.41□□□□□ -0.74
HDAC6-228ENST00000486227 THAP3Q8WTV1 239 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-228ENST00000486227 DNAJA4Q8WW22 397 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-228ENST00000486227 CHIAQ9BZP6 476 aa10.41□□□□□ -0.74
HDAC6-228ENST00000486227 B4GALT7Q9UBV7 327 aa10.41□□□□□ -0.74
HDAC6-228ENST00000486227 STUB1Q9UNE7 303 aa10.41□□□□□ -0.74
HDAC6-228ENST00000486227 ASB1Q9Y576 335 aa10.41□□□□□ -0.74
HDAC6-228ENST00000486227 MYO10Q9HD67 2058 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 SH3D21A4FU49 640 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 TNFRSF10AO00220 468 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 HCRTR2O43614 444 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 NUDT7P0C024 238 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 ITGA3P26006 1051 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 PDX1P52945 283 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 RPE65Q16518 533 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF550Q7Z398 422 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 KRT77Q7Z794 578 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 FAM109AQ8N4B1 249 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 OR8J1Q8NGP2 316 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 NUDT8Q8WV74 236 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 SNAPC3Q92966 411 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 ELSPBP1Q96BH3 223 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 DNAJA3Q96EY1 480 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 GAL3ST1Q99999 423 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 PLEKHA1Q9HB21 404 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 STARD5Q9NSY2 213 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 MAU2Q9Y6X3 613 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 ECDO95905 644 aaPredicted RBP10.4□□□□□ -0.74
HDAC6-228ENST00000486227 SLC6A6P31641 620 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 OTX2P32243 289 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 GNALP38405 381 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 ARFIP1P53367 373 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 PPP2R2BQ00005 443 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 NFATC4Q14934 902 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF676Q8N7Q3 588 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 MAFAQ8NHW3 353 aaPredicted RBP10.4□□□□□ -0.74
HDAC6-228ENST00000486227 TNFAIP8L1Q8WVP5 186 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 SLCO4A1Q96BD0 722 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF583Q96ND8 569 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 HIST1H2AAQ96QV6 131 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 CMKLR1Q99788 373 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 TTTY10Q9BZA0 68 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 COMMD4Q9H0A8 199 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 TNFRSF12AQ9NP84 129 aa10.4□□□□□ -0.74
HDAC6-228ENST00000486227 IQCMA0A1B0GVH7 501 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 FRS3O43559 492 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 SBK3P0C264 359 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 HIST1H1TP22492 207 aaPredicted RBP10.4□□□□□ -0.75
HDAC6-228ENST00000486227 GCGRP47871 477 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 DNASE1L1P49184 302 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 SNRPD2P62316 118 aaKnown RBP10.4□□□□□ -0.75
HDAC6-228ENST00000486227 YPEL5P62699 121 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 C6orf132Q5T0Z8 1188 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 LIPKQ5VXJ0 399 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 LRRC69Q6ZNQ3 347 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 PEG10Q86TG7 708 aaKnown RBP10.4□□□□□ -0.75
HDAC6-228ENST00000486227 LYSMD2Q8IV50 215 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 TIGD4Q8IY51 512 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 RPL3LQ92901 407 aaKnown RBP10.4□□□□□ -0.75
HDAC6-228ENST00000486227 ZNF300Q96RE9 604 aaPredicted RBP10.4□□□□□ -0.75
HDAC6-228ENST00000486227 LYSMD1Q96S90 227 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 ACTRT3Q9BYD9 372 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 TMEM168Q9H0V1 697 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 HHATLQ9HCP6 504 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 TCF7L1Q9HCS4 588 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 BRD7Q9NPI1 651 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 CD93Q9NPY3 652 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 ENAMQ9NRM1 1142 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 C14orf105Q9NVL8 296 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 CORINQ9Y5Q5 1042 aa10.4□□□□□ -0.75
HDAC6-228ENST00000486227 A0A0G2JPF8 293 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 HNRNPCL3B7ZW38 293 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 L7N2F9 121 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 SLC19A2O60779 497 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 RAB36O95755 333 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 HNRNPCL4P0DMR1 293 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 F3P13726 295 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ENDOUP21128 410 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 MAGEA2P43356 314 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 GPR4P46093 362 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 RPS5P46782 204 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 PFN3P60673 137 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 PUM1Q14671 1186 aaKnown RBP eCLIP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 LRIT3Q3SXY7 679 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 BCL7AQ4VC05 210 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 MEDAGQ5VYS4 303 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 PLPP6Q8IY26 295 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 FANK1Q8TC84 345 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 MED30Q96HR3 178 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 DHRS1Q96LJ7 313 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 HDAC8Q9BY41 377 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 OR51E2Q9H255 320 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 PLAC1Q9HBJ0 212 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 CENPMQ9NSP4 180 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ZFR2Q9UPR6 939 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 PCDHGB1Q9Y5G3 927 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 LCN1P31025 176 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 FGL2Q14314 439 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms