RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 LRRC1Q9BTT6 524 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 CAPS2Q9BXY5 557 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 KRTAP3-3Q9BYR6 98 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 KRTAP3-2Q9BYR7 98 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 IL22Q9GZX6 179 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 NXF5Q9H1B4 397 aaKnown RBP7.05□□□□□ -1.28
USP54-211ENST00000474929 OR10A5Q9H207 317 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 NPAP1Q9NZP6 1156 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 PPP4R1LQ9P1A2 415 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 KLHL13Q9P2N7 655 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 TRMT6Q9UJA5 497 aaKnown RBP7.05□□□□□ -1.28
USP54-211ENST00000474929 ZNF337Q9Y3M9 751 aa7.05□□□□□ -1.28
USP54-211ENST00000474929 HYDINQ4G0P3 5121 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 C2orf72A6NCS6 295 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 H0YC42 278 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 C3orf84H3BNL1 204 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 FRS3O43559 492 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 KERAO60938 352 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 UGT2B11O75310 529 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 TJP3O95049 919 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 VAPBO95292 243 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 PGM3O95394 542 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 GPR75O95800 540 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 CLPSP04118 112 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 SAGP10523 405 aaPredicted RBP7.04□□□□□ -1.28
USP54-211ENST00000474929 MTHFD2P13995 350 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 COX5AP20674 150 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 TCEA1P23193 301 aaKnown RBP7.04□□□□□ -1.28
USP54-211ENST00000474929 ME2P23368 584 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 SSTR4P31391 388 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 PTPN7P35236 360 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 SSR2P43308 183 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 SLC6A8P48029 635 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 TPD52P55327 224 aaPredicted RBP7.04□□□□□ -1.28
USP54-211ENST00000474929 SPOCK1Q08629 439 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 ZP4Q12836 540 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 MAP4K2Q12851 820 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 BAMBIQ13145 260 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 HLXQ14774 488 aaPredicted RBP7.04□□□□□ -1.28
USP54-211ENST00000474929 PDCD1Q15116 288 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 AP5B1Q2VPB7 878 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 ARL13AQ5H913 290 aaPredicted RBP7.04□□□□□ -1.28
USP54-211ENST00000474929 SAMD5Q5TGI4 173 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 LEG1Q6P5S2 330 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 ESPNLQ6ZVH7 1005 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 THOC6Q86W42 341 aaKnown RBP7.04□□□□□ -1.28
USP54-211ENST00000474929 TREML1Q86YW5 311 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 OR4N5Q8IXE1 308 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 FADS6Q8N9I5 356 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 ACOT4Q8N9L9 421 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 OR10D3Q8NH80 312 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 FAM110BQ8TC76 370 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 RNF128Q8TEB7 428 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 ATG4AQ8WYN0 398 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 CPNE4Q96A23 557 aaPredicted RBP7.04□□□□□ -1.28
USP54-211ENST00000474929 LRRC58Q96CX6 371 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 SLC35A4Q96G79 324 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 GPR21Q99679 349 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 CENPKQ9BS16 269 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 HEMGNQ9BXL5 484 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 LPAR2Q9HBW0 351 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 TIGARQ9NQ88 270 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 PRDM7Q9NQW5 492 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 CHRAC1Q9NRG0 131 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 NECAP2Q9NVZ3 263 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 GALPQ9UBC7 116 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 NOTCH3Q9UM47 2321 aa7.04□□□□□ -1.28
USP54-211ENST00000474929 CTAGE15A4D2H0 777 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 M0R1B8 84 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 PHGDHO43175 533 aaKnown RBP7.03□□□□□ -1.28
USP54-211ENST00000474929 LYZL6O75951 148 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 C1GALT1C1LP0DN25 315 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 GAAP10253 952 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 CD22P20273 847 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 COMTP21964 271 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 ATP5A1P25705 553 aaKnown RBP7.03□□□□□ -1.28
USP54-211ENST00000474929 IL12BP29460 328 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 SERPINB1P30740 379 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 ZNF83P51522 516 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 SLAMF1Q13291 335 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 SLBPQ14493 270 aaKnown RBP eCLIP7.03□□□□□ -1.28
USP54-211ENST00000474929 EFNB3Q15768 340 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 SLC18A3Q16572 532 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 OLFML2AQ68BL7 652 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 REP15Q6BDI9 236 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 DGAT2L6Q6ZPD8 337 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 RHOUQ7L0Q8 258 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 GALNT10Q86SR1 603 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 CTAGE6Q86UF2 777 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 GGNQ86UU5 652 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 LMNTD2Q8IXW0 634 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 SIGLECL1Q8N7X8 197 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 ZNF615Q8N8J6 731 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 ANKS4BQ8N8V4 417 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 FAM71DQ8N9W8 422 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.03□□□□□ -1.28
USP54-211ENST00000474929 OCSTAMPQ9BR26 566 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 NAT10Q9H0A0 1025 aaKnown RBP7.03□□□□□ -1.28
USP54-211ENST00000474929 EHD1Q9H4M9 534 aa7.03□□□□□ -1.28
USP54-211ENST00000474929 CXorf21Q9HAI6 301 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms