RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MECRQ9BV79 373 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 CRIM1Q9NZV1 1036 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 MED13LQ71F56 2210 aa16.84■□□□□ 0.29
COL7A1-209ENST00000474432 LSM1O15116 133 aaKnown RBP16.83■□□□□ 0.28
COL7A1-209ENST00000474432 CTAG2O75638 210 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 IGKV1D-16P01601 117 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 LINC00032P0C843 101 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 CREB1P16220 341 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 ZNF708P17019 499 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 CTSSP25774 331 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 NTSP30990 170 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 UQCRC1P31930 480 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 EVI2BP34910 448 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 KRT20P35900 424 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 FRKP42685 505 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-209ENST00000474432 PDE7AQ13946 482 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 SF3B4Q15427 424 aaKnown RBP eCLIP16.83■□□□□ 0.28
COL7A1-209ENST00000474432 SH2D4BQ5SQS7 431 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 IFNEQ86WN2 208 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 ZZZ3Q8IYH5 903 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 OR2M3Q8NG83 312 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 AENQ8WTP8 325 aaKnown RBP16.83■□□□□ 0.28
COL7A1-209ENST00000474432 CIDECQ96AQ7 238 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-209ENST00000474432 FAM111AQ96PZ2 611 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 CCT7Q99832 543 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 SLC24A3Q9HC58 644 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 DDX18Q9NVP1 670 aaKnown RBP16.83■□□□□ 0.28
COL7A1-209ENST00000474432 CLCF1Q9UBD9 225 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 BAIAP2L1Q9UHR4 511 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 MID2Q9UJV3 735 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 CBLCQ9ULV8 474 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 FIS1Q9Y3D6 152 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 OR10H1Q9Y4A9 318 aa16.83■□□□□ 0.28
COL7A1-209ENST00000474432 GXYLT2A0PJZ3 443 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 RGS14O43566 566 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 IL33O95760 270 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 IL18BPO95998 194 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 DPP4P27487 766 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 KIR2DL3P43628 341 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 CLDN15P56746 228 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 SRYQ05066 204 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 ARL13AQ5H913 290 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-209ENST00000474432 APOOLQ6UXV4 268 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 RIBC1Q8N443 379 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-209ENST00000474432 TSSK3Q96PN8 268 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 DSN1Q9H410 356 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 REEP4Q9H6H4 257 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 NTMQ9P121 344 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 GIMAP2Q9UG22 337 aa16.82■□□□□ 0.28
COL7A1-209ENST00000474432 ABCA4P78363 2273 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 CLCA1A8K7I4 914 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 AKAP10O43572 662 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 SCO2O43819 266 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 NPHS1O60500 1241 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 SPAG7O75391 227 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 RCBTB2O95199 551 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 CHMP24386 653 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 RPL38P63173 70 aaKnown RBP16.81■□□□□ 0.28
COL7A1-209ENST00000474432 MRPS22P82650 360 aaKnown RBP16.81■□□□□ 0.28
COL7A1-209ENST00000474432 HSPB3Q12988 150 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 RCAN2Q14206 197 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 ENPP6Q6UWR7 440 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 SPNS3Q6ZMD2 512 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 TMEM200AQ86VY9 491 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 OR6Y1Q8NGX8 325 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 CLHC1Q8NHS4 586 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 TCP10LQ8TDR4 215 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 GIMAP5Q96F15 307 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 SFXN2Q96NB2 322 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 ABCG2Q9UNQ0 655 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 RPH3AQ9Y2J0 694 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-209ENST00000474432 TRAF6Q9Y4K3 522 aa16.81■□□□□ 0.28
COL7A1-209ENST00000474432 H0Y3Z8 333 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 PIP5K1BO14986 540 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 PDPK1O15530 556 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 HCRTR2O43614 444 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 NKX2-2O95096 273 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 ZWINTO95229 277 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 TMIGD3P0DMS9 266 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-209ENST00000474432 NEFHP12036 1026 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 BCKDHAP12694 445 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 TCEA1P23193 301 aaKnown RBP16.8■□□□□ 0.28
COL7A1-209ENST00000474432 DNAJA1P31689 397 aaKnown RBP16.8■□□□□ 0.28
COL7A1-209ENST00000474432 GABRA3P34903 492 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 OPRM1P35372 400 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 DSCR4P56555 118 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-209ENST00000474432 FLYWCH1Q4VC44 716 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 XKR7Q5GH72 579 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 EXOSC6Q5RKV6 272 aaKnown RBP16.8■□□□□ 0.28
COL7A1-209ENST00000474432 ZCCHC23Q6ZST2 131 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 MARCH3Q86UD3 253 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 TWIST2Q8WVJ9 160 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 PIK3R3Q92569 461 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 WNT2BQ93097 391 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 LIME1Q9H400 295 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 Q9N2J8 555 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 FAM120CQ9NX05 1096 aaKnown RBP16.8■□□□□ 0.28
COL7A1-209ENST00000474432 MED11Q9P086 117 aa16.8■□□□□ 0.28
COL7A1-209ENST00000474432 PPP4R1LQ9P1A2 415 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 325.3 ms