RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OR6V1Q8N148 313 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 RHOXF1Q8NHV9 184 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 ARHGAP39Q9C0H5 1083 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 MTHFD2LQ9H903 347 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 B4GALT5O43286 388 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 UPP1Q16831 310 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 GPR157Q5UAW9 335 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 PPP2R2DQ66LE6 453 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 C6orf120Q7Z4R8 191 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 KLBQ86Z14 1044 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 FAM83FQ8NEG4 500 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 STEAP2Q8NFT2 490 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF705GA8MUZ8 300 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SDC3O75056 442 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 STSP08842 583 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 VEGFAP15692 232 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 RPS13P62277 151 aaKnown RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 KIAA0319Q5VV43 1072 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 EEF1DP3Q658K8 133 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 MAMDC2Q7Z304 686 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 OR5L2Q8NGL0 311 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 GAL3ST1Q99999 423 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 MIR1-1HGQ9H1L0 117 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 NSUN3Q9H649 340 aaKnown RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 B3GNT2Q9NY97 397 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SARDHQ9UL12 918 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 CACNA1IQ9P0X4 2223 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 VSTM2BA6NLU5 285 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SNCGO76070 127 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 RAB3DO95716 219 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 IMPA1P29218 277 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 CXCL9Q07325 125 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 OR5W2Q8NH69 310 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 HAS2Q92819 552 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SLC30A7Q8NEW0 376 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 OR52N2Q8NGI0 321 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 TFGQ92734 400 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 GMPR2Q9P2T1 348 aaKnown RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SAP18O00422 153 aaKnown RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 IMPA2O14732 288 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 NIPAL4Q0D2K0 466 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF266Q14584 549 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF695Q8IW36 515 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SULF2Q8IWU5 870 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 NANOS1Q8WY41 292 aaKnown RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 RTP4Q96DX8 246 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 RBMXL1Q96E39 390 aaKnown RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 TXNDC15Q96J42 360 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 MYADMQ96S97 322 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 FEVQ99581 238 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 METTL7AQ9H8H3 244 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 C1orf123Q9NWV4 160 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 CD8B2A6NJW9 211 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 H7C1Q1 480 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 RNASET2O00584 256 aaKnown RBP12.65□□□□□ -0.38
COL6A3-209ENST00000472056 CSTAP01040 98 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 CD8BP10966 210 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 NFATC2Q13469 925 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 SLC10A6Q3KNW5 377 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 USP51Q70EK9 711 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 OR7G3Q8NG95 312 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 DPF1Q92782 380 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 DOPEY2Q9Y3R5 2298 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM233B4DJY2 109 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 LALBAP00709 142 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 OPN1SWP03999 348 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 LSSP48449 732 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 TGM4P49221 684 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 HIPK2Q9H2X6 1198 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF286AQ9HBT8 521 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 E9PI62 339 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 ANKRD28O15084 1053 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 PRAMEF11O60813 436 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF254O75437 659 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 KCNE1P15382 129 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 PGCP20142 388 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 GRM2Q14416 872 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 C11orf91Q3C1V1 193 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 HIST2H3PS2Q5TEC6 136 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 DPY19L4Q7Z388 723 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 KANSL1Q7Z3B3 1105 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 CD163Q86VB7 1156 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 JSRP1Q96MG2 331 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-209ENST00000472056 CACFD1Q9UGQ2 172 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 ANKRD36A6QL64 1941 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 ACRV1P26436 265 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 IL1R2P27930 398 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 CACUL1Q86Y37 369 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 TREML1Q86YW5 311 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 LIX1LQ8IVB5 337 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 TSSK2Q96PF2 358 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 PINK1Q9BXM7 581 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 IGLV3-22A0A075B6J6 115 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 RPS17P08708 135 aaKnown RBP12.65□□□□□ -0.38
COL6A3-209ENST00000472056 METTL15P1P0C7V9 234 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 DAP3P51398 398 aaKnown RBP12.65□□□□□ -0.38
COL6A3-209ENST00000472056 P4HA3Q7Z4N8 544 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 GKN2Q86XP6 184 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 IMP4Q96G21 291 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms