RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SMPDL3BQ92485 455 aa15.9■□□□□ 0.14
COL7A1-206ENST00000466591 GFM2Q969S9 779 aaKnown RBP15.9■□□□□ 0.14
COL7A1-206ENST00000466591 PIGMQ9H3S5 423 aa15.9■□□□□ 0.14
COL7A1-206ENST00000466591 DSN1Q9H410 356 aa15.9■□□□□ 0.14
COL7A1-206ENST00000466591 STOML1Q9UBI4 398 aa15.9■□□□□ 0.14
COL7A1-206ENST00000466591 NDRG3Q9UGV2 375 aa15.9■□□□□ 0.14
COL7A1-206ENST00000466591 SERTM1A2A2V5 107 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 SLC22A20A6NK97 555 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 UBFD1O14562 309 aaKnown RBP15.89■□□□□ 0.13
COL7A1-206ENST00000466591 PDPK1O15530 556 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 SEC14L5O43304 696 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 GMFGO60234 142 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 RCBTB2O95199 551 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 PEPDP12955 493 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 CD99P14209 185 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 DDX5P17844 614 aaKnown RBP15.89■□□□□ 0.13
COL7A1-206ENST00000466591 KRT4P19013 534 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 CRHR1P34998 444 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 PRKAG1P54619 331 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 DNAJB13P59910 316 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 GANABQ14697 944 aaKnown RBP15.89■□□□□ 0.13
COL7A1-206ENST00000466591 VPS26BQ4G0F5 336 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 LIPMQ5VYY2 423 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 CLEC6AQ6EIG7 209 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 FAM71E1Q6IPT2 247 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 CHMP6Q96FZ7 201 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 FOXC2Q99958 501 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 GLIPR2Q9H4G4 154 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 LRTM1Q9HBL6 345 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 SIRT5Q9NXA8 310 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 SH3BP4Q9P0V3 963 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 PACSIN3Q9UKS6 424 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 EMCNQ9ULC0 261 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 ABCG2Q9UNQ0 655 aa15.89■□□□□ 0.13
COL7A1-206ENST00000466591 C19orf53Q9UNZ5 99 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-206ENST00000466591 EIF3LQ9Y262 564 aaKnown RBP15.89■□□□□ 0.13
COL7A1-206ENST00000466591 TLDC2A0PJX2 215 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 H3BML4 177 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 PLIN3O60664 434 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 SHBGP04278 402 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 HPGDP15428 266 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 GABRA3P34903 492 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 KCNJ5P48544 419 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 LHX2P50458 406 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 GFRA1P56159 465 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 RPS3AP61247 264 aaKnown RBP15.88■□□□□ 0.13
COL7A1-206ENST00000466591 PSG6Q00889 435 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 FOXF2Q12947 444 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 POU4F3Q15319 338 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 SGCBQ16585 318 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 PLXDC2Q6UX71 529 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 TRIM46Q7Z4K8 759 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 DDIASQ8IXT1 998 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 C4orf33Q8N1A6 199 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 GPR151Q8TDV0 419 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 MZB1Q8WU39 189 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 PPCDCQ96CD2 204 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 AMDHD1Q96NU7 426 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 FAM111AQ96PZ2 611 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 PRRG4Q9BZD6 226 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 OXSMQ9NWU1 459 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 C1orf109Q9NX04 203 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 GALNT8Q9NY28 637 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 MED11Q9P086 117 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 MRPS18CQ9Y3D5 142 aaKnown RBP15.88■□□□□ 0.13
COL7A1-206ENST00000466591 F8P00451 2351 aa15.88■□□□□ 0.13
COL7A1-206ENST00000466591 AZIN1O14977 448 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 AKAP10O43572 662 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 DIAPH2O60879 1101 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 RAF1P04049 648 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 NEFHP12036 1026 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 ZNF708P17019 499 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 SOX18P35713 384 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 MANFP55145 182 aaKnown RBP15.87■□□□□ 0.13
COL7A1-206ENST00000466591 IFFO1Q0D2I5 559 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 DAZAP2Q15038 168 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-206ENST00000466591 GALNTL6Q49A17 601 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 EPS8L3Q8TE67 593 aaKnown RBP15.87■□□□□ 0.13
COL7A1-206ENST00000466591 SLC9A6Q92581 669 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 ELP4Q96EB1 424 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 METTL2AQ96IZ6 378 aaKnown RBP15.87■□□□□ 0.13
COL7A1-206ENST00000466591 PIGQQ9BRB3 760 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 TXLNGYQ9BZA5 131 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 LIME1Q9H400 295 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 FAM120CQ9NX05 1096 aaKnown RBP15.87■□□□□ 0.13
COL7A1-206ENST00000466591 TACC2O95359 2948 aa15.87■□□□□ 0.13
COL7A1-206ENST00000466591 SH3D21A4FU49 640 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 TTC36A6NLP5 189 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 LINC01387J3KSC0 135 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 UPK1AO00322 258 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 IL33O95760 270 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 PRPS2P11908 318 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 CLDN18P56856 261 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 RPL38P63173 70 aaKnown RBP15.86■□□□□ 0.13
COL7A1-206ENST00000466591 SIRPAP78324 504 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 BCL2A1Q16548 175 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 ANKRD26P1Q6NSI1 321 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 POMZP3Q6PJE2 187 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 CAMKMTQ7Z624 323 aa15.86■□□□□ 0.13
COL7A1-206ENST00000466591 MARCH3Q86UD3 253 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms