RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	INAFM1	C9JVW0	142 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	KLF4	O43474	513 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	TNFRSF21	O75509	655 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	BCAS2	O75934	225 aa	Predicted RBP	10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	SMNDC1	O75940	238 aa	Known RBP eCLIP	10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	SOX30	O94993	753 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR4F21	O95013	312 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	SLU7	O95391	586 aa	Known RBP	10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	OTC	P00480	354 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	FPR1	P21462	350 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	TCEA1	P23193	301 aa	Known RBP	10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	EVI2B	P34910	448 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	HSD17B3	P37058	310 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	ALDH9A1	P49189	494 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	PTH2R	P49190	550 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	HTR6	P50406	440 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	CLDN20	P56880	219 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	EFR3A	Q14156	821 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	C20orf204	Q6ZNR8	217 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	GGN	Q86UU5	652 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	METTL25	Q8N6Q8	603 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	CNEP1R1	Q8N9A8	125 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	ZNF610	Q8N9Z0	462 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	FNDC9	Q8TBE3	224 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	EFHD2	Q96C19	240 aa	Predicted RBP	10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	PERP	Q96FX8	193 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	ZNF845	Q96IR2	970 aa	Predicted RBP	10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	FAIM2	Q9BWQ8	316 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	ACPT	Q9BZG2	426 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	RAB17	Q9H0T7	212 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	DSN1	Q9H410	356 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	ZNF701	Q9NV72	531 aa	Predicted RBP	10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	ZNF226	Q9NYT6	803 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	VPS29	Q9UBQ0	182 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	PSME2	Q9UL46	239 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	ZNF175	Q9Y473	711 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	ZNF780B	Q9Y6R6	833 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	HIVEP2	P31629	2446 aa		10.04	□□□□□ -0.8
PTPN7-204	ENST00000462815	IGLV3-32	A0A0A0MS00	114 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	MANBA	O00462	879 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	DSCAM	O60469	2012 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	AQP8	O94778	261 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	COL6A2	P12110	1019 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	PEPD	P12955	493 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	HSD3B1	P14060	373 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	POU2F1	P14859	743 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	HSD3B2	P26439	372 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	ARL1	P40616	181 aa	Predicted RBP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	SIRPA	P78324	504 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	PSPH	P78330	225 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	OCRL	Q01968	901 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	CSTF3	Q12996	717 aa	Known RBP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	UAP1	Q16222	522 aa	Predicted RBP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	GALNT18	Q6P9A2	607 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	SLC44A2	Q8IWA5	706 aa	Predicted RBP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	UBQLNL	Q8IYU4	475 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	OR5M1	Q8NGP8	315 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	DCAKD	Q8WVC6	231 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	CAVIN3	Q969G5	261 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	EXOSC8	Q96B26	276 aa	Known RBP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	C1GALT1C1	Q96EU7	318 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	APIP	Q96GX9	242 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	FAM111A	Q96PZ2	611 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	MRPL57	Q9BQC6	102 aa	Known RBP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	TMEM204	Q9BSN7	226 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	MED18	Q9BUE0	208 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	BDH2	Q9BUT1	245 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	REPIN1	Q9BWE0	567 aa	Known RBP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	MRPL46	Q9H2W6	279 aa	Known RBP	10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	PCNX3	Q9H6A9	2034 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	SIRT5	Q9NXA8	310 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	SNX6	Q9UNH7	406 aa		10.03	□□□□□ -0.8
PTPN7-204	ENST00000462815	MYO1G	B0I1T2	1018 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	C16orf97	H3BN30	126 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	SCO2	O43819	266 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	PCDH7	O60245	1069 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	SMIM24	O75264	130 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	CNOT4	O95628	575 aa	Known RBP	10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	NID1	P14543	1247 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	HK1	P19367	917 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	IL12B	P29460	328 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	ECHS1	P30084	290 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	SLC6A8	P48029	635 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	SLC7A5	Q01650	507 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	CLC	Q05315	142 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	GANAB	Q14697	944 aa	Known RBP	10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	PON3	Q15166	354 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	TSNAXIP1	Q2TAA8	658 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	UNC50	Q53HI1	259 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	ZNF678	Q5SXM1	525 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	APOOL	Q6UXV4	268 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	CXXC5	Q7LFL8	322 aa	Known RBP	10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	P4HA3	Q7Z4N8	544 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	CDYL2	Q8N8U2	506 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	OR4K17	Q8NGC6	315 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	C16orf78	Q8WTQ4	265 aa		10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	HOXB13	Q92826	284 aa	Predicted RBP	10.02	□□□□□ -0.81
PTPN7-204	ENST00000462815	MTBP	Q96DY7	904 aa		10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms