RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PRSS53Q2L4Q9 553 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 FBXL19-AS1Q494R0 122 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 CYP27C1Q4G0S4 372 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 FLYWCH1Q4VC44 716 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 OR5M10Q6IEU7 315 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 SZRD1Q7Z422 152 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 TRABD2AQ86V40 505 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 TRIM42Q8IWZ5 723 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 DDIASQ8IXT1 998 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 PPCDCQ96CD2 204 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 ELP4Q96EB1 424 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 ZBED6CLQ96FA7 236 aaPredicted RBP12.67□□□□□ -0.38
USP4-206ENST00000461553 ZNF764Q96H86 408 aaPredicted RBP12.67□□□□□ -0.38
USP4-206ENST00000461553 EGLN2Q96KS0 407 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 ZFP3Q96NJ6 502 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 TSSK3Q96PN8 268 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 FAM111AQ96PZ2 611 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 TM9SF2Q99805 663 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 TUBA1CQ9BQE3 449 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 LMF2Q9BU23 707 aaKnown RBP12.67□□□□□ -0.38
USP4-206ENST00000461553 GATA5Q9BWX5 397 aaPredicted RBP12.67□□□□□ -0.38
USP4-206ENST00000461553 ACBD3Q9H3P7 528 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 C3orf14Q9HBI5 128 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 EML4Q9HC35 981 aaKnown RBP12.67□□□□□ -0.38
USP4-206ENST00000461553 EQTNQ9NQ60 294 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 TMED5Q9Y3A6 229 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 CCL27Q9Y4X3 112 aa12.67□□□□□ -0.38
USP4-206ENST00000461553 C2CD3Q4AC94 2353 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 TTC36A6NLP5 189 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 CLCA1A8K7I4 914 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 NPHS1O60500 1241 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 DDX5P17844 614 aaKnown RBP12.66□□□□□ -0.38
USP4-206ENST00000461553 CLK3P49761 638 aaKnown RBP12.66□□□□□ -0.38
USP4-206ENST00000461553 GFRA1P56159 465 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 DSCR4P56555 118 aaPredicted RBP12.66□□□□□ -0.38
USP4-206ENST00000461553 VSNL1P62760 191 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 STX5Q13190 355 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 SNTB1Q13884 538 aaKnown RBP12.66□□□□□ -0.38
USP4-206ENST00000461553 GALNTL6Q49A17 601 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 RAET1LQ5VY80 246 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 ANKRD26P1Q6NSI1 321 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 GRAMD2AQ8IUY3 354 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 BANPQ8N9N5 519 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 C9orf106Q8NAJ2 232 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 OR2T11Q8NH01 316 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 TWIST2Q8WVJ9 160 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 CIDECQ96AQ7 238 aaPredicted RBP12.66□□□□□ -0.38
USP4-206ENST00000461553 FCRL1Q96LA6 429 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 SFXN3Q9BWM7 321 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 REEP4Q9H6H4 257 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 SDHAF3Q9NRP4 125 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 FAM120CQ9NX05 1096 aaKnown RBP12.66□□□□□ -0.38
USP4-206ENST00000461553 CRIM1Q9NZV1 1036 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 LGALS13Q9UHV8 139 aa12.66□□□□□ -0.38
USP4-206ENST00000461553 RPH3AQ9Y2J0 694 aaPredicted RBP12.66□□□□□ -0.38
USP4-206ENST00000461553 MRPS18CQ9Y3D5 142 aaKnown RBP12.66□□□□□ -0.38
USP4-206ENST00000461553 SYT5O00445 386 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 LSM1O15116 133 aaKnown RBP12.65□□□□□ -0.38
USP4-206ENST00000461553 AKAP10O43572 662 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 TBX19O60806 448 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 KCNH1O95259 989 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 IL33O95760 270 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 IL18BPO95998 194 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 CHRNGP07510 517 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 LINC00032P0C843 101 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 PRPS2P11908 318 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 ZNF708P17019 499 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 CHMP24386 653 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 MAPK1P28482 360 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 ALDH3A1P30838 453 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 HPCAL1P37235 193 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 ASMTP46597 345 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 CPA2P48052 419 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 LHX2P50458 406 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 GAS1P54826 345 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 VPS26BQ4G0F5 336 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 EMBQ6PCB8 327 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 ZNF551Q7Z340 670 aaPredicted RBP12.65□□□□□ -0.38
USP4-206ENST00000461553 KIF18BQ86Y91 864 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 CLHC1Q8NHS4 586 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 MS4A4EQ96PG1 132 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 GPATCH1Q9BRR8 931 aaKnown RBP12.65□□□□□ -0.38
USP4-206ENST00000461553 MECRQ9BV79 373 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 POLDIP3Q9BY77 421 aaKnown RBP12.65□□□□□ -0.38
USP4-206ENST00000461553 TBL1XR1Q9BZK7 514 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 TUBB1Q9H4B7 451 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 PTGES2Q9H7Z7 377 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 DNAJB12Q9NXW2 375 aaKnown RBP12.65□□□□□ -0.38
USP4-206ENST00000461553 SH3BP4Q9P0V3 963 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 CLCF1Q9UBD9 225 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 DNAJC15Q9Y5T4 150 aa12.65□□□□□ -0.38
USP4-206ENST00000461553 TMEM114B3SHH9 223 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 TMEM233B4DJY2 109 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 PIP5K1BO14986 540 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 SPAG7O75391 227 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 HK1P19367 917 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 POU3F2P20265 443 aaPredicted RBP12.64□□□□□ -0.39
USP4-206ENST00000461553 SERPINB5P36952 375 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 STARP49675 285 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 AGFG1P52594 562 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms