RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 NEIL3Q8TAT5 605 aa17.06■□□□□ 0.32
USP39-209ENST00000458268 DYDC1Q8WWB3 177 aa17.06■□□□□ 0.32
USP39-209ENST00000458268 FAM120BQ96EK7 910 aaKnown RBP17.06■□□□□ 0.32
USP39-209ENST00000458268 ATP6V1G3Q96LB4 118 aa17.06■□□□□ 0.32
USP39-209ENST00000458268 LMF2Q9BU23 707 aaKnown RBP17.06■□□□□ 0.32
USP39-209ENST00000458268 WDR55Q9H6Y2 383 aaPredicted RBP17.06■□□□□ 0.32
USP39-209ENST00000458268 QPCTLQ9NXS2 382 aa17.06■□□□□ 0.32
USP39-209ENST00000458268 COQ3Q9NZJ6 369 aa17.06■□□□□ 0.32
USP39-209ENST00000458268 PPP4R1LQ9P1A2 415 aa17.06■□□□□ 0.32
USP39-209ENST00000458268 DKKL1Q9UK85 242 aa17.06■□□□□ 0.32
USP39-209ENST00000458268 MRTO4Q9UKD2 239 aaKnown RBP17.06■□□□□ 0.32
USP39-209ENST00000458268 WIF1Q9Y5W5 379 aa17.06■□□□□ 0.32
USP39-209ENST00000458268 NCOA6Q14686 2063 aaPredicted RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 OR14I1A6ND48 311 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 ADAM10O14672 748 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 PSMG1O95456 288 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 SNRPB2P08579 225 aaKnown RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 ALOX5P09917 674 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 ELAVL4P26378 380 aaKnown RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 ACVR2AP27037 513 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 EPHA3P29320 983 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 EVI2BP34910 448 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 FRKP42685 505 aaPredicted RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 PSMD4P55036 377 aaKnown RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 PMPCAQ10713 525 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 LASP1Q14847 261 aaKnown RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 LSM12Q3MHD2 195 aaKnown RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 CYP27C1Q4G0S4 372 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 COX18Q8N8Q8 333 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 CDRT4Q8N9R6 151 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 FAM83FQ8NEG4 500 aaPredicted RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 OR5P2Q8WZ92 322 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 MARK4Q96L34 752 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 DMRTA2Q96SC8 542 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 CXorf36Q9H7Y0 433 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 MEAF6Q9HAF1 191 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 SIRT3Q9NTG7 399 aaPredicted RBP17.05■□□□□ 0.32
USP39-209ENST00000458268 CAMK2AQ9UQM7 478 aa17.05■□□□□ 0.32
USP39-209ENST00000458268 A0A1B0GVC2 190 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 FAM90A27PA6NNH2 459 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 C9JVG2 144 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 SDHDO14521 159 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 CPSF4O95639 269 aaKnown RBP17.04■□□□□ 0.32
USP39-209ENST00000458268 GRNP28799 593 aaKnown RBP17.04■□□□□ 0.32
USP39-209ENST00000458268 GCKP35557 465 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 CCT3P49368 545 aaKnown RBP17.04■□□□□ 0.32
USP39-209ENST00000458268 PRIM2P49643 509 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 CLDN8P56748 225 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 NUP107P57740 925 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 PSPHP78330 225 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 SNTA1Q13424 505 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 CDSNQ15517 529 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 DUSP5Q16690 384 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 TMEM211Q6ICI0 200 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 MFSD12Q6NUT3 480 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 ANKRD46Q86W74 232 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 PLCZ1Q86YW0 608 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 CCDC71Q8IV32 467 aaPredicted RBP17.04■□□□□ 0.32
USP39-209ENST00000458268 WDR75Q8IWA0 830 aaKnown RBP17.04■□□□□ 0.32
USP39-209ENST00000458268 CLECL1Q8IZS7 167 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 CLEC4FQ8N1N0 589 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 MARVELD2Q8N4S9 558 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 SLC16A11Q8NCK7 471 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 CA5BP1Q8WTZ4 195 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 TBL1XR1Q9BZK7 514 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 BHLHE41Q9C0J9 482 aaPredicted RBP17.04■□□□□ 0.32
USP39-209ENST00000458268 ACKR4Q9NPB9 350 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 HAO1Q9UJM8 370 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 FBXL2Q9UKC9 423 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 RPH3AQ9Y2J0 694 aaPredicted RBP17.04■□□□□ 0.32
USP39-209ENST00000458268 PHF3Q92576 2039 aaKnown RBP17.04■□□□□ 0.32
USP39-209ENST00000458268 MED12Q93074 2177 aa17.04■□□□□ 0.32
USP39-209ENST00000458268 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 TRPC5OSA6NMA1 111 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 HDAC3O15379 428 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 SNNO75324 88 aaPredicted RBP17.03■□□□□ 0.32
USP39-209ENST00000458268 UTS2O95399 124 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 IL33O95760 270 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 IGKV1D-16P01601 117 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 HMGN2P05204 90 aaKnown RBP17.03■□□□□ 0.32
USP39-209ENST00000458268 HPNP05981 417 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 HTR1EP28566 365 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 CLK3P49761 638 aaKnown RBP17.03■□□□□ 0.32
USP39-209ENST00000458268 RNF144AP50876 292 aaPredicted RBP17.03■□□□□ 0.32
USP39-209ENST00000458268 SLC18A1P54219 525 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 SMU1Q2TAY7 513 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 CCNJQ5T5M9 372 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 C1orf185Q5T7R7 199 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 XKRXQ6PP77 449 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 B3GNT6Q6ZMB0 384 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 MARCH3Q86UD3 253 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 RIMKLAQ8IXN7 391 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 WDSUB1Q8N9V3 476 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 GATSQ8NAP1 163 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 OR4A15Q8NGL6 344 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 RAB3IL1Q8TBN0 382 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 PHF10Q8WUB8 498 aaKnown RBP17.03■□□□□ 0.32
USP39-209ENST00000458268 ZNF75CPQ92670 426 aaPredicted RBP17.03■□□□□ 0.32
USP39-209ENST00000458268 RND1Q92730 232 aa17.03■□□□□ 0.32
USP39-209ENST00000458268 CDS1Q92903 461 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms