RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 NTSR1P30989 418 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 DCTDP32321 178 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 UGT1A3P35503 534 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 UGT1A5P35504 534 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 FDFT1P37268 417 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SERPINB10P48595 397 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CXCR3P49682 368 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PLA2G16P53816 162 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 GNG11P61952 73 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ARHGEF7Q14155 803 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 HNF4GQ14541 408 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC17A1Q14916 467 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 COLEC12Q5KU26 742 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF618Q5T7W0 954 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 NKAIN2Q5VXU1 208 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 DENND1BQ6P3S1 775 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CD300LGQ6UXG3 332 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 EIF3MQ7L2H7 374 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 IGFN1Q86VF2 1251 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 KLHL7Q8IXQ5 586 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM83FQ8NEG4 500 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CCDC54Q8NEL0 328 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SUN3Q8TAQ9 357 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CDS1Q92903 461 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 C16orf58Q96GQ5 468 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 FBXL20Q96IG2 436 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 LCORQ96JN0 433 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 LINC00615Q96LM1 132 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 RBM15Q96T37 977 aaKnown RBP eCLIP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CHP1Q99653 195 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CPNE1Q99829 537 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 HOPXQ9BPY8 73 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 LRRC2Q9BYS8 371 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ANKRD19PQ9H560 264 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 GAREM1Q9H706 876 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 DLL4Q9NR61 685 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SIRT7Q9NRC8 400 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 GTSE1Q9NYZ3 720 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SEMA5BQ9P283 1151 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF282Q9UDV7 671 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 Q9UFV3 132 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CDH7Q9ULB5 785 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 RBM8AQ9Y5S9 174 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PCM1Q15154 2024 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 C17orf102A2RUQ5 167 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 FITM1A5D6W6 292 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 C2orf78A6NCI8 922 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 TCAF2A6NFQ2 919 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 GLOD5A6NK44 160 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 KCNU1A8MYU2 1149 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 MCIDASD6RGH6 385 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 HS3ST1O14792 307 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PHYHO14832 338 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 BCKDKO14874 412 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 RGS5O15539 181 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 GRID2O43424 1007 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 KLK8O60259 260 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SDC3O75056 442 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 UGT2B11O75310 529 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 STX11O75558 287 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC22A5O76082 557 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 UGT2B4P06133 528 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ANXA4P09525 319 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SMIM18P0DKX4 95 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 MSR1P21757 451 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SERPINA4P29622 427 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SSTR2P30874 369 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 KHKP50053 298 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 BACE1P56817 501 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 HERV-K104P63124 156 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 MRPS22P82650 360 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 TXNL4AP83876 142 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 TAF1AQ15573 450 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PSMD5Q16401 504 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 GUK1Q16774 197 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF691Q5VV52 312 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC27A4Q6P1M0 643 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF529Q6P280 563 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 VSTM1Q6UX27 236 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 C3P1Q6ZMU1 363 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF572Q7Z3I7 529 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SPRED2Q7Z698 418 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 AMIGO1Q86WK6 493 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SPPL2CQ8IUH8 684 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ARHGAP12Q8IWW6 846 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 CFAP206Q8IYR0 622 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 MMP21Q8N119 569 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 BATF2Q8N1L9 274 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 POC5Q8NA72 575 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 OR7G3Q8NG95 312 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 OR1M1Q8NGA1 313 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 TRMT10AQ8TBZ6 339 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ACER1Q8TDN7 264 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ALG3Q92685 438 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 STMN2Q93045 179 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ERGIC1Q969X5 290 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 RNFT2Q96EX2 444 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PPP3R2Q96LZ3 170 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 NIPSNAP1Q9BPW8 284 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 FEM1AQ9BSK4 669 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms