RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 PCMT1P22061 227 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 SPCS2Q15005 226 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 ZNF628Q5EBL2 1059 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 GTF2IRD2BQ6EKJ0 949 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 ADCK1Q86TW2 530 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 GTF2IRD2Q86UP8 949 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 NKAIN4Q8IVV8 208 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 SPEM1Q8N4L4 309 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 GRHL3Q8TE85 626 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 RPL3LQ92901 407 aaKnown RBP12.74□□□□□ -0.37
CLK3-203ENST00000454830 TCTN2Q96GX1 697 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 SPRTNQ9H040 489 aaPredicted RBP12.74□□□□□ -0.37
CLK3-203ENST00000454830 TIMMDC1Q9NPL8 285 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 PSORS1C1Q9UIG5 152 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 LAMA1P25391 3075 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 RP1P56715 2156 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 A0A087WUU8 490 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 A0A1W2PR77 199 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 A0A1W2PRQ8 180 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 ZNF701M0R085 212 aaPredicted RBP12.74□□□□□ -0.37
CLK3-203ENST00000454830 CDK4P11802 303 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 TRHRP34981 398 aaPredicted RBP12.74□□□□□ -0.37
CLK3-203ENST00000454830 DCTN2Q13561 401 aaKnown RBP12.74□□□□□ -0.37
CLK3-203ENST00000454830 PRR23CQ6ZRP0 262 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 NRMQ8IXM6 262 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 NACC2Q96BF6 587 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 SH3GL3Q99963 347 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 SLC7A5P2Q9GIP4 190 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 PIGUQ9H490 435 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 EXOSC4Q9NPD3 245 aaKnown RBP12.74□□□□□ -0.37
CLK3-203ENST00000454830 WNT16Q9UBV4 365 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 GPR52Q9Y2T5 361 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 IFT52Q9Y366 437 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 SIT1Q9Y3P8 196 aa12.74□□□□□ -0.37
CLK3-203ENST00000454830 ZAR1LA6NP61 321 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 GNB5O14775 395 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 OR1D4P47884 311 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 MAN2A2P49641 1150 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 NCS1P62166 190 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 FLYWCH1Q4VC44 716 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 MANEAQ5SRI9 462 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 ZNF836Q6ZNA1 936 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 DGAT2L6Q6ZPD8 337 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 FBLIM1Q8WUP2 373 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 SLC7A7Q9UM01 511 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 VCANP13611 3396 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 TNRC18O15417 2968 aaPredicted RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 SRPX2O60687 465 aaPredicted RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 ZIC2O95409 532 aaPredicted RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 CKMT1AP12532 417 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 MAGEA8P43361 318 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 FZD5Q13467 585 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 MRPL2Q5T653 305 aaKnown RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 PRAMEF17Q5VTA0 474 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 TYW3Q6IPR3 259 aaKnown RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 ZNF770Q6IQ21 691 aaPredicted RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 RANBP3LQ86VV4 465 aaPredicted RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 FAM174AQ8TBP5 190 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 ZDHHC12Q96GR4 267 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 SLC41A3Q96GZ6 507 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 PNO1Q9NRX1 252 aaKnown RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 FTSJ1Q9UET6 329 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 PLCL2Q9UPR0 1127 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 TMEM265A0A087WTH1 108 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 LMO7DNF2Z398 122 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 MPZL2O60487 215 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 OR2B3O76000 313 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 CEBPEQ15744 281 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 MAPK14Q16539 360 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 C14orf28Q4W4Y0 310 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 PRICKLE2Q7Z3G6 844 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 SLCO6A1Q86UG4 719 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 Q96MT0 163 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 DSN1Q9H410 356 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 DHCR7Q9UBM7 475 aaKnown RBP12.73□□□□□ -0.37
CLK3-203ENST00000454830 ENPP5Q9UJA9 477 aa12.73□□□□□ -0.37
CLK3-203ENST00000454830 TMEM150CB9EJG8 249 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 MED26O95402 600 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 CDK1P06493 297 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 PRG2P13727 222 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 ATP6V1E1P36543 226 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 FASLGP48023 281 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 ILKQ13418 452 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 C16orf87Q6PH81 154 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 ZNF619Q8N2I2 560 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 ZNF675Q8TD23 568 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 PTCHD1Q96NR3 888 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 ITPAQ9BY32 194 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 ERVK-19Q9WJR5 959 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 PNMA8CA0A1B0GUJ8 204 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 CPED1A4D0V7 1026 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 HRKO00198 91 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 NADKO95544 446 aaPredicted RBP12.72□□□□□ -0.37
CLK3-203ENST00000454830 ATP1B1P05026 303 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 DMWDQ09019 674 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 PRICKLE4Q2TBC4 344 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 ARHGAP11BQ3KRB8 267 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 EIPR1Q53HC9 387 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 GATAD2AQ86YP4 633 aa12.72□□□□□ -0.37
CLK3-203ENST00000454830 GPR135Q8IZ08 494 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms