RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 ZNF385BQ569K4 471 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 XKR7Q5GH72 579 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 ADGRE4PQ86SQ3 457 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 TRIM42Q8IWZ5 723 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 RELL2Q8NC24 303 aaPredicted RBP17.62■□□□□ 0.41
USP40-207ENST00000450940 OR14L1PQ8NHC6 308 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 GFM2Q969S9 779 aaKnown RBP17.62■□□□□ 0.41
USP40-207ENST00000450940 PPCDCQ96CD2 204 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 TSSK3Q96PN8 268 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 UCN2Q96RP3 112 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 Q9N2J8 555 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 ACSS1Q9NUB1 689 aaPredicted RBP17.62■□□□□ 0.41
USP40-207ENST00000450940 TAS2R10Q9NYW0 307 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 BAIAP2L1Q9UHR4 511 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 ABCG2Q9UNQ0 655 aa17.62■□□□□ 0.41
USP40-207ENST00000450940 DVL2O14641 736 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 PIP5K1BO14986 540 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 ZIC3O60481 467 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 IL2RAP01589 272 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 BPGMP07738 259 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 PRPS2P11908 318 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 EVI2BP34910 448 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 WNT3P56703 355 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 ZNHIT3Q15649 155 aaPredicted RBP17.61■□□□□ 0.41
USP40-207ENST00000450940 ANKRD26P1Q6NSI1 321 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 ENPP6Q6UWR7 440 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 ZCCHC23Q6ZST2 131 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 IFNEQ86WN2 208 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 DDIASQ8IXT1 998 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 FADS6Q8N9I5 356 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 ZFP28Q8NHY6 868 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 CIDECQ96AQ7 238 aaPredicted RBP17.61■□□□□ 0.41
USP40-207ENST00000450940 ZBED6CLQ96FA7 236 aaPredicted RBP17.61■□□□□ 0.41
USP40-207ENST00000450940 PPP3R2Q96LZ3 170 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 FAM120CQ9NX05 1096 aaKnown RBP17.61■□□□□ 0.41
USP40-207ENST00000450940 MRTO4Q9UKD2 239 aaKnown RBP17.61■□□□□ 0.41
USP40-207ENST00000450940 L3MBTL1Q9Y468 752 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 AKAP9Q99996 3911 aa17.61■□□□□ 0.41
USP40-207ENST00000450940 AKAP10O43572 662 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 CHMP24386 653 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 LHX2P50458 406 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 ZNF136P52737 540 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 HSPB3Q12988 150 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 GALNTL6Q49A17 601 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 SH2D4BQ5SQS7 431 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 OR5M10Q6IEU7 315 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 LRIG3Q6UXM1 1119 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 WDR53Q7Z5U6 358 aaPredicted RBP17.6■□□□□ 0.41
USP40-207ENST00000450940 CEP70Q8NHQ1 597 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 TRIB1Q96RU8 372 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 PARD6BQ9BYG5 372 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 C3orf14Q9HBI5 128 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 SH3BP4Q9P0V3 963 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.6■□□□□ 0.41
USP40-207ENST00000450940 ATP6V1HQ9UI12 483 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 ZDHHC2Q9UIJ5 367 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 V9GYY5 206 aaPredicted RBP17.6■□□□□ 0.41
USP40-207ENST00000450940 MED12LQ86YW9 2145 aa17.6■□□□□ 0.41
USP40-207ENST00000450940 ANKHD1Q8IWZ3 2542 aaKnown RBP17.59■□□□□ 0.41
USP40-207ENST00000450940 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 NKX2-2O95096 273 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 DPP4P27487 766 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 ASCL1P50553 236 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 PSMD4P55036 377 aaKnown RBP17.59■□□□□ 0.41
USP40-207ENST00000450940 MANFP55145 182 aaKnown RBP17.59■□□□□ 0.41
USP40-207ENST00000450940 DSCR4P56555 118 aaPredicted RBP17.59■□□□□ 0.41
USP40-207ENST00000450940 B3GALT5-AS1P59052 145 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 ZNF844Q08AG5 666 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 RCAN2Q14206 197 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 MLC1Q15049 377 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 BCL2A1Q16548 175 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 AAGABQ6PD74 315 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 ARSKQ6UWY0 536 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 R3HCC1LQ7Z5L2 792 aaKnown RBP17.59■□□□□ 0.41
USP40-207ENST00000450940 CLHC1Q8NHS4 586 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 GIMAP5Q96F15 307 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 C3orf30Q96M34 536 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 SH3GL2Q99962 352 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 TUBA1CQ9BQE3 449 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 G6PC3Q9BUM1 346 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 RTN4RQ9BZR6 473 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 SDHAF3Q9NRP4 125 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 FLRT3Q9NZU0 649 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 RAB21Q9UL25 225 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 CCDC168Q8NDH2 2452 aa17.59■□□□□ 0.41
USP40-207ENST00000450940 TMEM114B3SHH9 223 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 IL18BPO95998 194 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 ZNF708P17019 499 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 BMP5P22003 454 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 CTSSP25774 331 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 MAPK1P28482 360 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 GABRA3P34903 492 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 GPC1P35052 558 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 PEX19P40855 299 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 CLDN18P56856 261 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 VPS26BQ4G0F5 336 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 EXOSC6Q5RKV6 272 aaKnown RBP17.58■□□□□ 0.4
USP40-207ENST00000450940 C6orf136Q5SQH8 315 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 CES4AQ5XG92 561 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 CDRT4Q8N9R6 151 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms