RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 GOT1L1Q8NHS2 421 aaPredicted RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 NXPE3Q969Y0 559 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ST6GAL2Q96JF0 529 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 CD180Q99467 661 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 PPIL3Q9H2H8 161 aaKnown RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 MRPL39Q9NYK5 338 aaKnown RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 CALML5Q9NZT1 146 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 SLC7A7Q9UM01 511 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ATG4BQ9Y4P1 393 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ATG2BQ96BY7 2078 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 MEN1O00255 615 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 PROM1O43490 865 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 DPM1O60762 260 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 OLFM2O95897 454 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 DRD5P21918 477 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 CMPK1P30085 196 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 TRIM23P36406 574 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 CD79BP40259 229 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 STXBP1P61764 594 aaKnown RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 ELAVL3Q14576 367 aaKnown RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 FAM205BPQ63HN1 556 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 FIGNL1Q6PIW4 674 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 COX18Q8N8Q8 333 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 BBS1Q8NFJ9 593 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 SMAP2Q8WU79 429 aaPredicted RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 SNX33Q8WV41 574 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ZG16BQ96DA0 208 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 NUDT15Q9NV35 164 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 DPP7Q9UHL4 492 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 GMFGO60234 142 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 SEMA3DO95025 777 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 CHRM4P08173 479 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 NDUFV2P19404 249 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 HMGA2P52926 109 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 ZNF79Q15937 498 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 NTRK2Q16620 822 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 RANBP3LQ86VV4 465 aaPredicted RBP11.15□□□□□ -0.62
MSH6-204ENST00000445503 CLDN22Q8N7P3 220 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 SLC41A3Q96GZ6 507 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 LMLNQ96KR4 655 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 FCRL1Q96LA6 429 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 RIPOR3Q96MK2 946 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 CCDC3Q9BQI4 270 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 ZNF717Q9BY31 904 aaPredicted RBP11.15□□□□□ -0.62
MSH6-204ENST00000445503 DPEP2Q9H4A9 486 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 REV1Q9UBZ9 1251 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 KCNE3Q9Y6H6 103 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 SPACA6W5XKT8 324 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 ANTXRLA6NF34 631 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 KIAA0355O15063 1070 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 EMC8O43402 210 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 PIP5K1CO60331 668 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 PAHP00439 452 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 CD3GP09693 182 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 ETV6P41212 452 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 RPS5P46782 204 aaKnown RBP11.15□□□□□ -0.62
MSH6-204ENST00000445503 ENTPD8Q5MY95 495 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 CPA6Q8N4T0 437 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 FAM26EQ8N5C1 309 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 SRFBP1Q8NEF9 429 aaKnown RBP11.15□□□□□ -0.62
MSH6-204ENST00000445503 WFIKKN2Q8TEU8 576 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 ZFPM2Q8WW38 1151 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 OR7D2Q96RA2 312 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 TRIM36Q9NQ86 728 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 ZNF224Q9NZL3 707 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 V9GYH0 126 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 PTPRDP23468 1912 aa11.15□□□□□ -0.62
MSH6-204ENST00000445503 A0A1W2PP55 124 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 I3L521 148 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 NFATC1O95644 943 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 CEBPBP17676 345 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 RPL6Q02878 288 aaKnown RBP11.15□□□□□ -0.63
MSH6-204ENST00000445503 OCLNQ16625 522 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 ANKRD54Q6NXT1 300 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 LINGO2Q7L985 606 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 TMC8Q8IU68 726 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 GJD3Q8N144 294 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 OR6K6Q8NGW6 343 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 NDC1Q9BTX1 674 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 SEMA4GQ9NTN9 838 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 A4GNTQ9UNA3 340 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 RASD1Q9Y272 281 aa11.15□□□□□ -0.63
MSH6-204ENST00000445503 DICER1Q9UPY3 1922 aaKnown RBP11.15□□□□□ -0.63
MSH6-204ENST00000445503 A0A0G2JMP0 313 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 A0A0X1KG70 313 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 IQCMA0A1B0GVH7 501 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 NPC1O15118 1278 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 OR10H2O60403 315 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 KHDRBS3O75525 346 aaKnown RBP11.14□□□□□ -0.63
MSH6-204ENST00000445503 DRD2P14416 443 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 SHC1P29353 583 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 BSGP35613 385 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 HSD17B2P37059 387 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 NAA10P41227 235 aaPredicted RBP11.14□□□□□ -0.63
MSH6-204ENST00000445503 PDE7AQ13946 482 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 C3orf38Q5JPI3 329 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 SLC39A5Q6ZMH5 540 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 NUDT18Q6ZVK8 323 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 OR4M2Q8NGB6 313 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 OR5H6Q8NGV6 325 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms