RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 HLCSP50747 726 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 ART1P52961 327 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 HMBOX1Q6NT76 420 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 POT1Q9NUX5 634 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 AGAP5A6NIR3 686 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 SLC9B1P1A6NJY1 282 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 ERCC1P07992 297 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-209ENST00000438120 IRF2P14316 349 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 RAB3BP20337 219 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 NTRK2Q16620 822 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 METTL2AQ96IZ6 378 aaKnown RBP16.25■□□□□ 0.19
PTPRF-209ENST00000438120 FAM71F1Q96KD3 344 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-209ENST00000438120 DNTTIP1Q9H147 329 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 TAS2R3Q9NYW6 316 aa16.25■□□□□ 0.19
PTPRF-209ENST00000438120 UBE2J1Q9Y385 318 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-209ENST00000438120 PET100P0DJ07 73 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 EIF2B1Q14232 305 aaKnown RBP16.24■□□□□ 0.19
PTPRF-209ENST00000438120 IRF4Q15306 451 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 MICAQ29983 383 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ABHD17BQ5VST6 288 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 CPOQ8IVL8 374 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 KLHL9Q9P2J3 617 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 RIMS3Q9UJD0 308 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 B3GALT1Q9Y5Z6 326 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ACOT7O00154 380 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 NPC1O15118 1278 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ADAP00813 363 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 HSD17B1P14061 328 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 CDK3Q00526 305 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 PDZD3Q86UT5 571 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 CDS1Q92903 461 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 MBLAC1A4D2B0 266 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-209ENST00000438120 POLR1CO15160 346 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-209ENST00000438120 OSMP13725 252 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 MFSD13AQ14CX5 517 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 EXOSC7Q15024 291 aaKnown RBP16.24■□□□□ 0.19
PTPRF-209ENST00000438120 SDR9C7Q8NEX9 313 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ADAMTS18Q8TE60 1221 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ERVK-19Q9WJR5 959 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 NAALAD2Q9Y3Q0 740 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ZNF175Q9Y473 711 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 F5H5K5 113 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 HTR3BO95264 441 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ITGB7P26010 798 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 PTH2RP49190 550 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 GALNT1Q10472 559 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ERV3-1Q14264 604 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ANKK1Q8NFD2 765 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 FOXN4Q96NZ1 517 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 TMPRSS11EQ9UL52 423 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 ANTXRLA6NF34 631 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 SYT7O43581 403 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 IFNGR1P15260 489 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 THBS2P35442 1172 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 FTMTQ8N4E7 242 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 AKAP12Q02952 1782 aa16.24■□□□□ 0.19
PTPRF-209ENST00000438120 BORCS7-ASMTA0A0B4J1R7 106 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 SDC1P18827 310 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 POTEKPQ9BYX7 375 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 ZNF705EA8MWA4 302 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-209ENST00000438120 PRAMEF26H0Y7S4 382 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 ADAM12O43184 909 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 DIRAS3O95661 229 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 CD79AP11912 226 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 TIMP2P16035 220 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 ZNF181Q2M3W8 571 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 HNRNPA1L2Q32P51 320 aaKnown RBP16.23■□□□□ 0.19
PTPRF-209ENST00000438120 MARCH8Q5T0T0 291 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 SLC35F2Q8IXU6 374 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 ACOT4Q8N9L9 421 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 RCBTB1Q8NDN9 531 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 TREX2Q9BQ50 279 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-209ENST00000438120 LHPPQ9H008 270 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 ZDHHC7Q9NXF8 308 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 CDC14CA4D256 554 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 IFNA2P01563 188 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 LCATP04180 440 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 DRD1P21728 446 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 RGRP47804 291 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 KIAA0895LQ68EN5 471 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 OR5M10Q6IEU7 315 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 LRRC46Q96FV0 321 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 ARFGEF2Q9Y6D5 1785 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 LCKP06239 509 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 DRD5P21918 477 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 XCR1P46094 333 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 SELENOWP63302 87 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 RHEBQ15382 184 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 NKPD1Q17RQ9 610 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 PIP5KL1Q5T9C9 394 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 BMFQ96LC9 184 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 EIF5A2Q9GZV4 153 aaKnown RBP16.23■□□□□ 0.19
PTPRF-209ENST00000438120 ZNF334Q9HCZ1 680 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-209ENST00000438120 IER3IP1Q9Y5U9 82 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 JRKO75564 520 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 DDCP20711 480 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 DNASE1P24855 282 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 CCR7P32248 378 aa16.23■□□□□ 0.19
PTPRF-209ENST00000438120 PLEKHN1Q494U1 663 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-209ENST00000438120 DPPA4Q7L190 304 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms