RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ABATP80404 500 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 ARHGAP19Q14CB8 494 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 FAM27D1Q5T7N8 215 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 LAPTM4BQ86VI4 370 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 YIPF7Q8N8F6 280 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 GDPD1Q8N9F7 314 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 OR9A2Q8NGT5 310 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 SLC35A4Q96G79 324 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 C10orf90Q96M02 699 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 PRSS27Q9BQR3 290 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 SLC22A4Q9H015 551 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 MED20Q9H944 212 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 ISYNA1Q9NPH2 558 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 ADAM29Q9UKF5 820 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CSNK1G3Q9Y6M4 447 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CLCA3PQ9Y6N3 262 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 FAM170BA6NMN3 283 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 OR52A4PA6NMU1 304 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 E9PI62 339 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 HYAL3O43820 417 aaPredicted RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 SOX9P48436 509 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 SMSP52788 366 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 SCN1BQ07699 218 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 TSPAN31Q12999 210 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 CEBPEQ15744 281 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 TATDN3Q17R31 274 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 PYDC2Q56P42 97 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 ABHD17CQ6PCB6 329 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 SLC36A4Q6YBV0 504 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 FAM92BQ6ZTR7 304 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 LRRTM4Q86VH4 590 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 CADM2Q8N3J6 435 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 DUSP18Q8NEJ0 188 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 SPRYD4Q8WW59 207 aaPredicted RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 ZC3HAV1LQ96H79 300 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 HINT3Q9NQE9 182 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 GIMAP4Q9NUV9 329 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 AHSPQ9NZD4 102 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 ZFR2Q9UPR6 939 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 LOC102723532A0A0G2JNH3 316 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 TMCC2O75069 709 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 EML2O95834 649 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 F3P13726 295 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 ATP5A1P25705 553 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 EVI2BP34910 448 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 MLLT3P42568 568 aaPredicted RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 ZNF136P52737 540 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 PRDX1Q06830 199 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.22□□□□□ -0.93
SS18-203ENST00000415083 RPA4Q13156 261 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 LRRC32Q14392 662 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 FNDC3BQ53EP0 1204 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 FAM46CQ5VWP2 391 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 SLC27A4Q6P1M0 643 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 RASSF6Q6ZTQ3 369 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 GDF7Q7Z4P5 450 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 LIX1LQ8IVB5 337 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 ACOT4Q8N9L9 421 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 BBS10Q8TAM1 723 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 DOK4Q8TEW6 326 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 DNAJA4Q8WW22 397 aaPredicted RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 KAT2AQ92830 837 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 ZNF514Q96K75 400 aaPredicted RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 CITED4Q96RK1 184 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 TMEM43Q9BTV4 400 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 PINK1Q9BXM7 581 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 ZCCHC2Q9C0B9 1178 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 RNF208Q9H0X6 261 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 PRSS16Q9NQE7 514 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 IL20Q9NYY1 176 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 KCNE5Q9UJ90 142 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 COL4A2P08572 1712 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 A0A1B0GVC2 190 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 A6NIN4 97 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 AKAP8O43823 692 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 ERAL1O75616 437 aaKnown RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 PAHP00439 452 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 GNRH1P01148 92 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 SERPIND1P05546 499 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 TSPAN19P0C672 248 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 PRG2P13727 222 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 ELK1P19419 428 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 HOXD11P31277 338 aaPredicted RBP9.22□□□□□ -0.93
SS18-203ENST00000415083 AGBL4Q5VU57 503 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 C1orf53Q5VUE5 145 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 IL20RBQ6UXL0 311 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 FRRS1Q6ZNA5 592 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 PEX5LQ8IYB4 626 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 SPPL3Q8TCT6 385 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 EQTNQ9NQ60 294 aa9.22□□□□□ -0.93
SS18-203ENST00000415083 A0A0G2JK05 382 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 CLEC3AO75596 197 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 HIST1H1TP22492 207 aaPredicted RBP9.21□□□□□ -0.93
SS18-203ENST00000415083 HLA-DMAP28067 261 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 ERVK-21P61565 698 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 RIN1Q13671 783 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 ELAVL3Q14576 367 aaKnown RBP9.21□□□□□ -0.93
SS18-203ENST00000415083 MAPK14Q16539 360 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 TMEM64Q6YI46 380 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 C12orf76Q8N812 135 aaPredicted RBP9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms