RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 KRCC1Q9NPI7 259 aaPredicted RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 DDX19AQ9NUU7 478 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 C1RLQ9NZP8 487 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ATXN10Q9UBB4 475 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PEF1Q9UBV8 284 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 FKBP7Q9Y680 259 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CACNA1GO43497 2377 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ANTXRLA6NF34 631 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 TMEM191CA6NGB0 347 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 DVL1O14640 695 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 NBR2O15453 112 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ZNHIT1O43257 154 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 NARSO43776 548 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 PLEKHA8P1O95397 391 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CSF2P04141 144 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 TFAP2AP05549 437 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 TMEM191BP0C7N4 346 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 SAGP10523 405 aaPredicted RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 U2AF2P26368 475 aaKnown RBP eCLIP2.3□□□□□ -2.04
MCF2-204ENST00000414978 FCGR2BP31994 310 aaPredicted RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 DVL1P1P54792 670 aaPredicted RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 BNC1Q01954 994 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 BST1Q10588 318 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 NME3Q13232 169 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 STX1AQ16623 288 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 SPATS1Q496A3 300 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 MPPE1Q53F39 396 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 BEND6Q5SZJ8 279 aaPredicted RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 CELF3Q5SZQ8 465 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 TAF3Q5VWG9 929 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 NKAIN2Q5VXU1 208 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 LYSMD4Q5XG99 296 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 SLC22A10Q63ZE4 541 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ASPHD2Q6ICH7 369 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CBLN3Q6UW01 205 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 SYT10Q6XYQ8 523 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 Q6ZSR3 168 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 C16orf62Q7Z3J2 963 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PHLDB2Q86SQ0 1253 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CLEC4FQ8N1N0 589 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 GCSAMQ8N6F7 178 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ZNF565Q8N9K5 539 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 TEX45Q8NA69 505 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 OR8K3Q8NH51 312 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CCDC107Q8WV48 283 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PIBF1Q8WXW3 757 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ELSPBP1Q96BH3 223 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 HMCESQ96FZ2 354 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PCED1BQ96HM7 432 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 AGPAT1Q99943 283 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 FN3KRPQ9HA64 309 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 RAVER2Q9HCJ3 691 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 POLE4Q9NR33 117 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 VPS54Q9P1Q0 977 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ERVK-18Q9QC07 812 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PILRAQ9UKJ1 303 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 DIMT1Q9UNQ2 313 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 SATB2Q9UPW6 733 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 E9PBE3 544 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 E9PI62 339 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ALOX15BO15296 676 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 RGS14O43566 566 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 FCMRO60667 390 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CLN5O75503 358 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 GRAP2O75791 330 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 RHOBTB1O94844 696 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ZNF883P0CG24 379 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PRF1P14222 555 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 TNNI3P19429 210 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 NT5EP21589 574 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CALML3P27482 149 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CYLC1P35663 651 aaPredicted RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 RPS5P46782 204 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 RPS13P62277 151 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 IRX4P78413 519 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 KLRC3Q07444 240 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 SLAMF1Q13291 335 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 RBMS2Q15434 407 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 UGT3A2Q3SY77 523 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PHYHD1Q5SRE7 291 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CCNYL2Q5T2Q4 361 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 LIPNQ5VXI9 398 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ZNF600Q6ZNG1 722 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PRSS48Q7RTY5 328 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PARP8Q8N3A8 854 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 BBS5Q8N3I7 341 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 FAM86B1Q8N7N1 296 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 LINC00301Q8NCQ3 95 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 MAGEC3Q8TD91 643 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 TMEM255BQ8WV15 326 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 PIGCQ92535 297 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 EMG1Q92979 244 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 GLYATL1Q969I3 302 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ROGDIQ9GZN7 287 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 SHARPINQ9H0F6 387 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 RHOJQ9H4E5 214 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 CYP3A43Q9HB55 503 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 ADGRL4Q9HBW9 690 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 SLC52A3Q9NQ40 469 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 EIF3KQ9UBQ5 218 aaKnown RBP2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms